PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074837.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28045.3 Da    PI: 10.5956
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.34.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+ rqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gkl+eys+
  XP_027074837.1  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDAEVALIVFSTKGKLFEYST 59
                    79***********************************************96 PP

2K-box972.9e-328717413100
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ +++ e+ kL ++ie Lqr+++h++GedL+sLsl+eLq LeqqL+ +l++iR++Kn++++e+i el+kkek lqe+n  L k+++e
  XP_027074837.1  87 QQDNWSLEHPKLVSRIELLQRNIKHYVGEDLDSLSLRELQTLEQQLDAALRRIRTRKNQVMHESIAELRKKEKTLQEQNSLLAKQIKE 174
                     6789*********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD AEVALIVFST KGKLFEYSTE  60
SSMERILERY ERYSYAEKRL SGSGPGQQDN WSLEHPKLVS RIELLQRNIK HYVGEDLDSL  120
SLRELQTLEQ QLDAALRRIR TRKNQVMHES IAELRKKEKT LQEQNSLLAK QIKENDKIVM  180
ERLHLIQRSS ALVLSEPAPG SVPVPSLAAG GPFQVRGPTG EEDGRRGKNT LMPPPPPPPW  240
LVRRMS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.12e-90MIKC_MADS family protein