PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074766.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GeBP

Protein Properties

Length: 411aa MW: 45428.4 Da PI: 5.5949

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	119.3	2.1e-37	188	285	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlwse+Dei++L+G++d+ ak++++p +d++af ef+kk+i+++vsk+ql +KirrLKkK++++ ++ +k +ke +fsk+h+qk++e+skk+ XP_027074766.1 188 LFQRLWSEDDEIAILKGMLDYSAKKKADPINDLNAFLEFIKKNIHIDVSKTQLQDKIRRLKKKYENNAEReKKGNKELTFSKPHEQKAYEFSKKV 282 79****************************************************************9955667899*************** PP DUF573 96 Wgs 98 Wg+ XP_027074766.1 283 WGK 285 *95 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MAKPRETAKP DPPVESEEEE ESGEEEEEGS SEESESQPEN EPSQKKTASP PAPATKKPES 60 ATPKTQPTSA AAAASSSDES EDEESGSDTD SDTETPSEKP DPSIKPIASK PMDGPQKTTT 120 TAKKPRSKPN ALGPTSPAKS TTGAGAKRTA SAAGSDEGKD AKRSKKKPEA EAESSERKGN 180 SNDDSRRLFQ RLWSEDDEIA ILKGMLDYSA KKKADPINDL NAFLEFIKKN IHIDVSKTQL 240 QDKIRRLKKK YENNAEREKK GNKELTFSKP HEQKAYEFSK KVWGKEKNGD GEENVESTKA 300 NGTAVRKSRS RSAVVGMTPK VDEVEEKLKE VKDLVGEKNV VEGLKNDSFG PTDSLRIEEW 360 VLKRAHLIKD AKKRAELEEK WRELKVKEIE LLARRSELMA EQSKLVLEGL K

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MAKPRETAKP DPPVESEEEE ESGEEEEEGS SEESESQPEN EPSQKKTASP PAPATKKPES  60
ATPKTQPTSA AAAASSSDES EDEESGSDTD SDTETPSEKP DPSIKPIASK PMDGPQKTTT  120
TAKKPRSKPN ALGPTSPAKS TTGAGAKRTA SAAGSDEGKD AKRSKKKPEA EAESSERKGN  180
SNDDSRRLFQ RLWSEDDEIA ILKGMLDYSA KKKADPINDL NAFLEFIKKN IHIDVSKTQL  240
QDKIRRLKKK YENNAEREKK GNKELTFSKP HEQKAYEFSK KVWGKEKNGD GEENVESTKA  300
NGTAVRKSRS RSAVVGMTPK VDEVEEKLKE VKDLVGEKNV VEGLKNDSFG PTDSLRIEEW  360
VLKRAHLIKD AKKRAELEEK WRELKVKEIE LLARRSELMA EQSKLVLEGL K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	1e-30	GeBP family protein