PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074537.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 608aa    MW: 66465 Da    PI: 5.0312
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS457.11.1e-1392366001374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++L++cAea+++++++ a+al++++  la ++  +m+++a+yf+eALa+r+++        + p+++ e++ s++l++   f+e +P+lkf+h
  XP_027074537.1 236 LVHTLMACAEAIQQDNMKVADALVKHIGILAVSQVGAMRKVATYFAEALARRIYK--------IYPQDSLESSYSDVLQM--HFYESCPYLKFAH 320
                     689****************************************************........44555555556666555..4************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taNqaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +va++l+dl+
  XP_027074537.1 321 FTANQAILEAFSGASRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNSDALQQVGWKLAHLAKTIGVEFEFRGFVANSLADLD 415
                     *********************************************************************************************** PP

            GRAS 191 leeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.ee 281
                      ++L+++p   Ea+aVn+v++lhrll++++++++    vL+ +ks++Pk+v vveqea+hn++ F++rf eal+yys++fdsl +++l ++s ++
  XP_027074537.1 416 ASMLEIRPceVEAVAVNSVFELHRLLSRPGAIDK----VLNSIKSMRPKIVAVVEQEANHNGNVFMDRFNEALHYYSTMFDSLeSSGLTQQSnSQ 506
                     ********999***************88888877....*********************************************767788777799 PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + ++++++lgr+i+nvvaceg +r+erhetl +Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  XP_027074537.1 507 DLVMSEVYLGRQICNVVACEGVDRVERHETLTQWRGRMNSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 600
                     *********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
MKMKRDRNRD KGEASSSSMV KIHLPTPSPP PPFSTKTKMW EEEQQQAADA GMDELLAVLG  60
YKVKSSDMAE VAQKLEQLER VMGTTMEDGI SCLSDTVHYN PSDLSGWVQS MLSELNNVNL  120
PPSSATSIIS YDEISPAIGG TDGATNDRDL IFDDDLRAIP GDAIFCNSNN NNNSATSKEN  180
AKESSPSCES NKRMKSSPSS TGSDFGGISV SSINPPSSDA ARPVVLVDSQ ETGIRLVHTL  240
MACAEAIQQD NMKVADALVK HIGILAVSQV GAMRKVATYF AEALARRIYK IYPQDSLESS  300
YSDVLQMHFY ESCPYLKFAH FTANQAILEA FSGASRVHVI DFSLKQGMQW PALMQALALR  360
PGGPPAFRLT GIGPPQPDNS DALQQVGWKL AHLAKTIGVE FEFRGFVANS LADLDASMLE  420
IRPCEVEAVA VNSVFELHRL LSRPGAIDKV LNSIKSMRPK IVAVVEQEAN HNGNVFMDRF  480
NEALHYYSTM FDSLESSGLT QQSNSQDLVM SEVYLGRQIC NVVACEGVDR VERHETLTQW  540
RGRMNSAGFD PVHLGSNAFK QASMLLALFA GGDGYRVEEN DGCLMLGWHT RPLIATSAWQ  600
LRDGSESS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein