PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074386.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HSF
Protein Properties Length: 304aa    MW: 33694.3 Da    PI: 4.8915
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074386.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind117.21e-36101022103
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+  +++isw+e+g++fvv+++ efak++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF++++Fk+g+kell++
  XP_027074386.1  10 FLTKTYQLVDDPCSDDVISWNESGTTFVVWKTAEFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDK---------WEFANDNFKRGRKELLTD 95 
                     9****************************************************************999.........****************** PP

                     XXXXXXX CS
    HSF_DNA-bind  97 ikrkkse 103
                     i+r+k++
  XP_027074386.1  96 IRRRKTT 102
                     ****976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MCQRTVPAPF LTKTYQLVDD PCSDDVISWN ESGTTFVVWK TAEFAKDLLP NYFKHNNFSS  60
FVRQLNTYGF RKIVPDKWEF ANDNFKRGRK ELLTDIRRRK TTTSTQSTNQ AGAGKSLTTA  120
NPTSPANSGE DLGSSSTSFP GSKSPGSVDT LSAEQFADLS DENEKLKKDN QMLSSELAQT  180
KKQCDDLVAF LTKHVNVAPD QINSIMNQGA AVGEMNFNEN NCVVDDRVDS KEADDDDDDE  240
NGNGGSLKLF GVTLLTEKNR KRGRDDMDVG YAEVRPRKDV KTLDFCAAWM RIASCAGETS  300
KVCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.19e-81HSF family protein