PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027074383.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 231aa    MW: 25665.6 Da    PI: 9.0383
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027074383.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.74.4e-135298354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    ++h+e+ErrRR+riN  +++Lr llPk       K +Ka+ L ++v++I++L
  XP_027074383.1 52 KSHSEAERRRRKRINGHLATLRNLLPKT-----IKADKASLLAEVVRCIREL 98
                    79*************************8.....69***************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MHTLPSFYEV GSCSESYNFL HEILNSREQL HLDNSTVNAI SMAEAKAVAA NKSHSEAERR  60
RRKRINGHLA TLRNLLPKTI KADKASLLAE VVRCIRELKK STEELSATEG DDQSNTAMKL  120
MFPSETDELK LCYDDGDSRT IKATLCCEDR PEMMIELKRA LNAVKAKVVK AEMATVGGRT  180
KTVLWLQASA AGEEGLATIR RALKVVVDRS IMLPTPGQAL PGNKRPRLYH C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-34bHLH family protein