PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027074250.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 766aa MW: 86381.1 Da PI: 5.9878

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027074250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.3e-19	605	652	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027074250.1 605 ITREVLEQNSTRKLEDAAKNIGVSRSTLKRICREYGIRRWPPRKERKV 652 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFNQWTFWS ACGNDEGRCG KPHHLSATAD 60 AAVIKTDIKW FLQLFMETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC SYFDPDVKPL 120 CEYRKLCLEY LIPVDDDDDD ELIIGPPGRV FRSGFPEHAE DVGDYTSREY PQRDYAVDRV 180 RVYWALPIYH PTRHLPIGVL EIVTPYVYFP RHWILEKLQN LLRKVNLTTT CARLAEASSC 240 QDGEIAKIDK ALRNTKSIFK RPKRGLYYPE TWTTSGEILS SREGVDFIRK GQGVVGRAFS 300 SKSACFCRDI RQLSITDYPL LLKALSLGYS SCFAVCLQSS CSNNCIYVLE FFLPSNEKDS 360 GDSRILLNSI MEKLKKHLGS SFKIALGQEL GQKLTVEVIK VSPEDEFDSF EICGTAGIES 420 TPRLGEVQGG EGMMQLDFSS QQVDAANGSM DGIHEQQNGS VGSIPRLAKA QGGEGTMRVD 480 FFSSQQVDSA NAYINGVHGQ QSGIVGCPPR PEHMQGFVDK SYLELNLAGV DVTHNSMNGT 540 YDQQNGIVRP STGQVLMQNM VSIVDHEPIV EDPERDDAST EQSGNEVTNL KMQEPSCTLK 600 SDLGITREVL EQNSTRKLED AAKNIGVSRS TLKRICREYG IRRWPPRKER KVSQVFVKQK 660 VVHPPTENIE EHHRLYATRL EDDGSMWVIK AKYQEDKIKF ELSSSASKID LEKKIAQRLN 720 LSLGSFKIKY QDELNDWILI SCDTDLSFCM KTLHKLGRTT IEMLVS

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFNQWTFWS ACGNDEGRCG KPHHLSATAD  60
AAVIKTDIKW FLQLFMETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC SYFDPDVKPL  120
CEYRKLCLEY LIPVDDDDDD ELIIGPPGRV FRSGFPEHAE DVGDYTSREY PQRDYAVDRV  180
RVYWALPIYH PTRHLPIGVL EIVTPYVYFP RHWILEKLQN LLRKVNLTTT CARLAEASSC  240
QDGEIAKIDK ALRNTKSIFK RPKRGLYYPE TWTTSGEILS SREGVDFIRK GQGVVGRAFS  300
SKSACFCRDI RQLSITDYPL LLKALSLGYS SCFAVCLQSS CSNNCIYVLE FFLPSNEKDS  360
GDSRILLNSI MEKLKKHLGS SFKIALGQEL GQKLTVEVIK VSPEDEFDSF EICGTAGIES  420
TPRLGEVQGG EGMMQLDFSS QQVDAANGSM DGIHEQQNGS VGSIPRLAKA QGGEGTMRVD  480
FFSSQQVDSA NAYINGVHGQ QSGIVGCPPR PEHMQGFVDK SYLELNLAGV DVTHNSMNGT  540
YDQQNGIVRP STGQVLMQNM VSIVDHEPIV EDPERDDAST EQSGNEVTNL KMQEPSCTLK  600
SDLGITREVL EQNSTRKLED AAKNIGVSRS TLKRICREYG IRRWPPRKER KVSQVFVKQK  660
VVHPPTENIE EHHRLYATRL EDDGSMWVIK AKYQEDKIKF ELSSSASKID LEKKIAQRLN  720
LSLGSFKIKY QDELNDWILI SCDTDLSFCM KTLHKLGRTT IEMLVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	1e-41	Nin-like family protein