PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073583.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 1424aa MW: 156527 Da PI: 6.291

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.5e-06	1401	1424	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C + H+ XP_027073583.1 1401 GQRVCK-FYESGHCKKGASCDYLHP 1424 6799.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1424 aa Download sequence
MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ 60 VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC 120 FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS 180 LCKGCTKDAE YVCVRGNKGF CTTCMRTVML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW 240 LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGGMVPISDH SVHLESKVPK 300 EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL 360 LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLTKE DDQNNAFIPA 420 GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN 480 LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM 540 LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN 600 DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP 660 NYKSEEDIAG ELLKSKISSF NKNESQSISP KSREDGMNRS HQSRQKRDAR GLSGPAKNEM 720 QVPVSGSESG SGNQQVVRFG SETSTATLPT GSSTPANTSE TEKIWHYRDP NGRIQGPFAM 780 VQLRKWSTTG YFPADMRIWT INELDESVLL IDALNEFFHK DYRSLHNVSR PQENGPASSD 840 NGTLHSFNPD QTFVAPLHQE RGYGIEEFKS VLDHENQSPH ETPTDQATGV QCNEKSSSSQ 900 SYVGQSSGQN CRSVPLNLDL NCKDCNSSLA SVTTPSDSAE QQGDIDILDL PSPTPKTSKS 960 NVEGQDVEKK ESGFDGHVQG SEKSDLPSPS PKPIDDDVPD PTPEPMDEDL AGTTYPPKNE 1020 VLPSPSPIPT GGDVREQIDK TNQPPLPKVS VPDSGPGWNS TSGLRVGEAQ LQKIADEWDG 1080 YSPTDPKPSV QEWDTSLAPV ASLKPPEVLG DHVTPGSINN TTQLVHASPC QPASNISSWQ 1140 AIVNEPIEFS TLAEESVSDL LAEVDAMESQ SGLASPTSGM KCSDEMMDSC RNDCFSSIEE 1200 LSPTADAGKS DAVSSNREVQ FPPSVTDDPG GTSQADGFDR LKASGGHSTS SSEGETKSAD 1260 APVDPRETGL DVHPPPACTM SQGMVGSTMA RNRGMESMDA GWAGVPGNMN MGWGGSPQGF 1320 PNMGWGSGMV PPWGNPSYNL GGYNGSLPWD SPRRYNGERF AGPRDWGFQG GDSGFGRGRP 1380 MWSRQSHGGG GGGYSRPPHK GQRVCKFYES GHCKKGASCD YLHP

Sequence ? help Back to Top

Protein Sequence Length: 1424 aa Download sequence

MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ  60
VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC  120
FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS  180
LCKGCTKDAE YVCVRGNKGF CTTCMRTVML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW  240
LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGGMVPISDH SVHLESKVPK  300
EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL  360
LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLTKE DDQNNAFIPA  420
GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN  480
LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM  540
LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN  600
DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP  660
NYKSEEDIAG ELLKSKISSF NKNESQSISP KSREDGMNRS HQSRQKRDAR GLSGPAKNEM  720
QVPVSGSESG SGNQQVVRFG SETSTATLPT GSSTPANTSE TEKIWHYRDP NGRIQGPFAM  780
VQLRKWSTTG YFPADMRIWT INELDESVLL IDALNEFFHK DYRSLHNVSR PQENGPASSD  840
NGTLHSFNPD QTFVAPLHQE RGYGIEEFKS VLDHENQSPH ETPTDQATGV QCNEKSSSSQ  900
SYVGQSSGQN CRSVPLNLDL NCKDCNSSLA SVTTPSDSAE QQGDIDILDL PSPTPKTSKS  960
NVEGQDVEKK ESGFDGHVQG SEKSDLPSPS PKPIDDDVPD PTPEPMDEDL AGTTYPPKNE  1020
VLPSPSPIPT GGDVREQIDK TNQPPLPKVS VPDSGPGWNS TSGLRVGEAQ LQKIADEWDG  1080
YSPTDPKPSV QEWDTSLAPV ASLKPPEVLG DHVTPGSINN TTQLVHASPC QPASNISSWQ  1140
AIVNEPIEFS TLAEESVSDL LAEVDAMESQ SGLASPTSGM KCSDEMMDSC RNDCFSSIEE  1200
LSPTADAGKS DAVSSNREVQ FPPSVTDDPG GTSQADGFDR LKASGGHSTS SSEGETKSAD  1260
APVDPRETGL DVHPPPACTM SQGMVGSTMA RNRGMESMDA GWAGVPGNMN MGWGGSPQGF  1320
PNMGWGSGMV PPWGNPSYNL GGYNGSLPWD SPRRYNGERF AGPRDWGFQG GDSGFGRGRP  1380
MWSRQSHGGG GGGYSRPPHK GQRVCKFYES GHCKKGASCD YLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein