PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073582.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 1426aa MW: 156726 Da PI: 6.3355

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.5e-06	1403	1426	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+ f+++G+Ck G++C + H+ XP_027073582.1 1403 GQRVCK-FYESGHCKKGASCDYLHP 1426 6799.8899***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1426 aa Download sequence
MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ 60 VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC 120 FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS 180 LCKGCTKDAE YVCVRGNKGF CTTCMRTVML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW 240 LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGGMVPISDH SVHLESKVPK 300 EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL 360 LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLTKE DDQNNAFIPA 420 GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN 480 LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM 540 LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN 600 DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP 660 NYKSEEDIAG ELLKSKISSF NKNESQSISP KSRAKEDGMN RSHQSRQKRD ARGLSGPAKN 720 EMQVPVSGSE SGSGNQQVVR FGSETSTATL PTGSSTPANT SETEKIWHYR DPNGRIQGPF 780 AMVQLRKWST TGYFPADMRI WTINELDESV LLIDALNEFF HKDYRSLHNV SRPQENGPAS 840 SDNGTLHSFN PDQTFVAPLH QERGYGIEEF KSVLDHENQS PHETPTDQAT GVQCNEKSSS 900 SQSYVGQSSG QNCRSVPLNL DLNCKDCNSS LASVTTPSDS AEQQGDIDIL DLPSPTPKTS 960 KSNVEGQDVE KKESGFDGHV QGSEKSDLPS PSPKPIDDDV PDPTPEPMDE DLAGTTYPPK 1020 NEVLPSPSPI PTGGDVREQI DKTNQPPLPK VSVPDSGPGW NSTSGLRVGE AQLQKIADEW 1080 DGYSPTDPKP SVQEWDTSLA PVASLKPPEV LGDHVTPGSI NNTTQLVHAS PCQPASNISS 1140 WQAIVNEPIE FSTLAEESVS DLLAEVDAME SQSGLASPTS GMKCSDEMMD SCRNDCFSSI 1200 EELSPTADAG KSDAVSSNRE VQFPPSVTDD PGGTSQADGF DRLKASGGHS TSSSEGETKS 1260 ADAPVDPRET GLDVHPPPAC TMSQGMVGST MARNRGMESM DAGWAGVPGN MNMGWGGSPQ 1320 GFPNMGWGSG MVPPWGNPSY NLGGYNGSLP WDSPRRYNGE RFAGPRDWGF QGGDSGFGRG 1380 RPMWSRQSHG GGGGGYSRPP HKGQRVCKFY ESGHCKKGAS CDYLHP

Sequence ? help Back to Top

Protein Sequence Length: 1426 aa Download sequence

MDGGDSSSAL HAPRAETTVS SQSFDQCGLV REMDDSQLVG VPLAVAGDAA VPVKAGEPQQ  60
VPPSAVQLNK TTLGAVGQVM EKRKRGRPPK GHAALAPAPA PPKPPPPKRN KEEEDVCFIC  120
FDGGSLVLCD RKGCPKAYHP ACIKRDEAFF RSKAKWNCGW HICSVCQKAA HYMCYTCTYS  180
LCKGCTKDAE YVCVRGNKGF CTTCMRTVML IENKDLGNSE VVQVDFDDKT SWEYLFKVYW  240
LYLKSNLSLT INELMQAKNP WRGLAMMDYK QQLPARNHFA NGGMVPISDH SVHLESKVPK  300
EQPELLNHDS FLNTEKINSD KVTNLAECKE WASKELLELV AHVRNGDTSM LSQFDVQALL  360
LEYIKRNNLR DPRRKSQIIC DLRLKNLFGK PRVGHIEMLK LLEYHFLTKE DDQNNAFIPA  420
GIVGSVGGNV GVDQKNSLMV NQGKKRKTRR KGEEKTPQTN LDDYAAIDLH NINLIYLRRN  480
LLENLLGDEE KFHDKVVGSV VRIRVSCNDQ KQDIYRLVQV VGTSKASMAY KLGDKMTHVM  540
LEVLNLNKKE TTSIEAISNQ EFSQEECRRL RQSIRCGLVK HWTVGEIQTK AFALQAVKLN  600
DVLEAEILRL NHLRDRANEK GHKKQLRECI EKLQLLKTPE ERQRRLTEIP KVHADPKMNP  660
NYKSEEDIAG ELLKSKISSF NKNESQSISP KSRAKEDGMN RSHQSRQKRD ARGLSGPAKN  720
EMQVPVSGSE SGSGNQQVVR FGSETSTATL PTGSSTPANT SETEKIWHYR DPNGRIQGPF  780
AMVQLRKWST TGYFPADMRI WTINELDESV LLIDALNEFF HKDYRSLHNV SRPQENGPAS  840
SDNGTLHSFN PDQTFVAPLH QERGYGIEEF KSVLDHENQS PHETPTDQAT GVQCNEKSSS  900
SQSYVGQSSG QNCRSVPLNL DLNCKDCNSS LASVTTPSDS AEQQGDIDIL DLPSPTPKTS  960
KSNVEGQDVE KKESGFDGHV QGSEKSDLPS PSPKPIDDDV PDPTPEPMDE DLAGTTYPPK  1020
NEVLPSPSPI PTGGDVREQI DKTNQPPLPK VSVPDSGPGW NSTSGLRVGE AQLQKIADEW  1080
DGYSPTDPKP SVQEWDTSLA PVASLKPPEV LGDHVTPGSI NNTTQLVHAS PCQPASNISS  1140
WQAIVNEPIE FSTLAEESVS DLLAEVDAME SQSGLASPTS GMKCSDEMMD SCRNDCFSSI  1200
EELSPTADAG KSDAVSSNRE VQFPPSVTDD PGGTSQADGF DRLKASGGHS TSSSEGETKS  1260
ADAPVDPRET GLDVHPPPAC TMSQGMVGST MARNRGMESM DAGWAGVPGN MNMGWGGSPQ  1320
GFPNMGWGSG MVPPWGNPSY NLGGYNGSLP WDSPRRYNGE RFAGPRDWGF QGGDSGFGRG  1380
RPMWSRQSHG GGGGGYSRPP HKGQRVCKFY ESGHCKKGAS CDYLHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	0.0	C3H family protein