PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073550.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 511aa MW: 55611.1 Da PI: 8.3469

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.8	2e-32	241	297	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK vk +e+prsYY+Ct+++Cpvkkkver++ d++v+eitY+g+Hnhe XP_027073550.1 241 SDGYNWRKYGQKLVKAKEHPRSYYKCTHPNCPVKKKVERAS-DGQVTEITYKGQHNHE 297 7**************************************.*************7 PP
2	WRKY	107.7	5.7e-34	419	477	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver++ dpk+v++tYeg+Hnh+ XP_027073550.1 419 LDDGYKWRKYGQKVVKGNPHPRSYYRCTFAGCNVRKHVERASADPKAVITTYEGKHNHD 477 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MGQTEMGTET GGAAAKGQRR PTITVPPRAP FEPLFTSGSM PGYSPGPMTL LSNIFSPDSN 60 SCSFSQLLAG AMASPIGKPT FFATAGDYST ENYAAIDVNF GVGNDKGSGY KQNRPMGLVV 120 AQSPLFLVPP ALSPSGFLNS PGFLSPLQSP FGMSHQQALA HVTAQAALSQ SFVQIQADFQ 180 RASGIASAEA AELKPSSLPS ETLQEDVHSI PAEPQTLKMV PLEASQSDKK TVSFALDKPA 240 SDGYNWRKYG QKLVKAKEHP RSYYKCTHPN CPVKKKVERA SDGQVTEITY KGQHNHELPQ 300 PNTRAKDNSC LNGMMSSEVN PESGSRWQTE VTHDAATSHL NNLKQKAFTQ LSSEQFPVAS 360 EQDEREDSAT VIDEDIDDDE EPNAKRRSTE VGAGVPAPLH KTVTEPKIVV QTRSEVDLLD 420 DGYKWRKYGQ KVVKGNPHPR SYYRCTFAGC NVRKHVERAS ADPKAVITTY EGKHNHDIPA 480 GRNSGQNNVN TNTKLKPRRP VARKSSVDRE V

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MGQTEMGTET GGAAAKGQRR PTITVPPRAP FEPLFTSGSM PGYSPGPMTL LSNIFSPDSN  60
SCSFSQLLAG AMASPIGKPT FFATAGDYST ENYAAIDVNF GVGNDKGSGY KQNRPMGLVV  120
AQSPLFLVPP ALSPSGFLNS PGFLSPLQSP FGMSHQQALA HVTAQAALSQ SFVQIQADFQ  180
RASGIASAEA AELKPSSLPS ETLQEDVHSI PAEPQTLKMV PLEASQSDKK TVSFALDKPA  240
SDGYNWRKYG QKLVKAKEHP RSYYKCTHPN CPVKKKVERA SDGQVTEITY KGQHNHELPQ  300
PNTRAKDNSC LNGMMSSEVN PESGSRWQTE VTHDAATSHL NNLKQKAFTQ LSSEQFPVAS  360
EQDEREDSAT VIDEDIDDDE EPNAKRRSTE VGAGVPAPLH KTVTEPKIVV QTRSEVDLLD  420
DGYKWRKYGQ KVVKGNPHPR SYYRCTFAGC NVRKHVERAS ADPKAVITTY EGKHNHDIPA  480
GRNSGQNNVN TNTKLKPRRP VARKSSVDRE V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13960.1	1e-136	WRKY family protein