PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073481.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 541aa MW: 58730.1 Da PI: 6.1361

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073481.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96	2.6e-30	208	266	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ XP_027073481.1 208 SDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILITTYEGTHNHP 266 7*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 541 aa Download sequence
MAEDKISDDS VSHHAVECSK EAFKDDEFES AKAEMSEVRE ENARLKTLLE KIEKDYKSLQ 60 MRFVDICQPE ANKKSDHDPP RSGNGQIEEL ELVSLCLGRS PSDPKKNNND SSSSFKNRKE 120 DENLKEGLKL GLDFNCFQDC KSDAIDLSTD PSPDNSALES KEEEAAGETW PPSKVLKAMR 180 NEDDDLSQAS IKRARVSVRA RCDTPTMSDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP 240 VRKQVQRCAE DMSILITTYE GTHNHPLPVS ATAMASATAA AASMLLSGSS SSEPGLGPAA 300 TTNLRSNLHG LNVNLSDNSK YHPYYLPNSS SSPFPSITLD LTTNPSTSSA QFNMFSSTSL 360 QSRLPSTSLS FSPSQTNVPP ALWSNNNLNY GAISYNKNQM ISTLSSGRTS QEHLYQPFKQ 420 KNYQAPASQQ ALTETLTKAI TSDPSFRSVI AAAITTMVGG GGATPANIKV ENLGKKLKWD 480 EQMTVTSSNG CTSSFLSQSS SSASQSVNLR KQRTQPAFSV SIGAPSATPV DDMDQTNSGE 540 P

Sequence ? help Back to Top

Protein Sequence Length: 541 aa Download sequence

MAEDKISDDS VSHHAVECSK EAFKDDEFES AKAEMSEVRE ENARLKTLLE KIEKDYKSLQ  60
MRFVDICQPE ANKKSDHDPP RSGNGQIEEL ELVSLCLGRS PSDPKKNNND SSSSFKNRKE  120
DENLKEGLKL GLDFNCFQDC KSDAIDLSTD PSPDNSALES KEEEAAGETW PPSKVLKAMR  180
NEDDDLSQAS IKRARVSVRA RCDTPTMSDG CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP  240
VRKQVQRCAE DMSILITTYE GTHNHPLPVS ATAMASATAA AASMLLSGSS SSEPGLGPAA  300
TTNLRSNLHG LNVNLSDNSK YHPYYLPNSS SSPFPSITLD LTTNPSTSSA QFNMFSSTSL  360
QSRLPSTSLS FSPSQTNVPP ALWSNNNLNY GAISYNKNQM ISTLSSGRTS QEHLYQPFKQ  420
KNYQAPASQQ ALTETLTKAI TSDPSFRSVI AAAITTMVGG GGATPANIKV ENLGKKLKWD  480
EQMTVTSSNG CTSSFLSQSS SSASQSVNLR KQRTQPAFSV SIGAPSATPV DDMDQTNSGE  540
P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	6e-86	WRKY family protein