PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073416.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 800aa MW: 91115 Da PI: 6.9197

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.6	1.4e-30	100	192	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s s+ks+r+g i++r fvC keg+r e++k+ +++r+raetr+gCka+l+vk +++g w+v+++++ HnHel+p XP_027073416.1 100 FYNSYARRIGFSTRVSMSRKSRRDGAIIQRSFVCAKEGFRIEKEKSgcnGGRAKRPRAETRVGCKAMLVVKIQDSGSWVVSSFVKGHNHELVP 192 9***************************************999999889999***********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 800 aa Download sequence
MDFEPLTVGN DVTEFDMLGL GIGIGLGEET IDIAHPMDED EDEDEDKDRN FVNPFHSSSD 60 GVNFSGNGGN SGEICVLGGD TNLEPYEGME FESEEAAKAF YNSYARRIGF STRVSMSRKS 120 RRDGAIIQRS FVCAKEGFRI EKEKSGCNGG RAKRPRAETR VGCKAMLVVK IQDSGSWVVS 180 SFVKGHNHEL VPPDKVHCLR SHRHVSGAAK SLIDTLQGAG IGPSGIMSAL IKEYGGISNV 240 GFTERDCRNY MRSSKQRTLG GDTQVLLDYF KQKHLENPAF FYAVQGDEDQ CMSNIFWADP 300 KALSNYTYFG DTVTFDSTYR SNRYRLPFAP FTGVNHHGQP VLFGCALLVN ESEASFVWLF 360 KTWLAAMSGK LPISITTHHD RVIRSAVTQV FPEVRHRFCK WHIFKECQEK LSPMLSEHPT 420 FEAELHKCVN FTDSFEEFES CWCNLIDGYA LRENEWLQNV YADRKQWVPV YLRDTFFAEL 480 SITQRSDSMN SYFDGYVNAS TTVQLFIKQY EKALESRHEK EVKADYDTMN AAPILKTPSP 540 MEKQAADIYT RKLFIKFQEE LVETLTFLAT KIEDQEEATT YQVAKFGESH KVHFVRYSVR 600 EMKATCSCQM FEFSGLLCRH ILTVFRVANV LTLPPLYVLR RWTKSARSSL MLEDATNVLS 660 NGSRESLTAR YSKLRHEVFK YVDEGMQTEE TYNAAMDALR EAANKVSMAR KTARTSSVSN 720 RTRKQDHSTL EHDERNIDGV PPLDSDEQDK KIQKLTRQLK RAQRKCEAYR ANLFAVLKDI 780 EQQKLQLSVK VQNIKLGIKD

Sequence ? help Back to Top

Protein Sequence Length: 800 aa Download sequence

MDFEPLTVGN DVTEFDMLGL GIGIGLGEET IDIAHPMDED EDEDEDKDRN FVNPFHSSSD  60
GVNFSGNGGN SGEICVLGGD TNLEPYEGME FESEEAAKAF YNSYARRIGF STRVSMSRKS  120
RRDGAIIQRS FVCAKEGFRI EKEKSGCNGG RAKRPRAETR VGCKAMLVVK IQDSGSWVVS  180
SFVKGHNHEL VPPDKVHCLR SHRHVSGAAK SLIDTLQGAG IGPSGIMSAL IKEYGGISNV  240
GFTERDCRNY MRSSKQRTLG GDTQVLLDYF KQKHLENPAF FYAVQGDEDQ CMSNIFWADP  300
KALSNYTYFG DTVTFDSTYR SNRYRLPFAP FTGVNHHGQP VLFGCALLVN ESEASFVWLF  360
KTWLAAMSGK LPISITTHHD RVIRSAVTQV FPEVRHRFCK WHIFKECQEK LSPMLSEHPT  420
FEAELHKCVN FTDSFEEFES CWCNLIDGYA LRENEWLQNV YADRKQWVPV YLRDTFFAEL  480
SITQRSDSMN SYFDGYVNAS TTVQLFIKQY EKALESRHEK EVKADYDTMN AAPILKTPSP  540
MEKQAADIYT RKLFIKFQEE LVETLTFLAT KIEDQEEATT YQVAKFGESH KVHFVRYSVR  600
EMKATCSCQM FEFSGLLCRH ILTVFRVANV LTLPPLYVLR RWTKSARSSL MLEDATNVLS  660
NGSRESLTAR YSKLRHEVFK YVDEGMQTEE TYNAAMDALR EAANKVSMAR KTARTSSVSN  720
RTRKQDHSTL EHDERNIDGV PPLDSDEQDK KIQKLTRQLK RAQRKCEAYR ANLFAVLKDI  780
EQQKLQLSVK VQNIKLGIKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1 family protein