PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073408.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family TCP
Protein Properties Length: 407aa    MW: 44350.9 Da    PI: 7.0937
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP99.75.1e-31631872105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 
                      g+kdrhsk++T +g+RdRRvRls+++a +++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s+  + + + +++++  g        
  XP_027073408.1  63 FGGKDRHSKVCTVRGLRDRRVRLSVPTAVQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLQMPPGSFNHSFQPVWATHHPVVGahqvtkdq 157
                     689*************************************************************7777644433444444443333333333334 PP

             TCP  89 .............kaaksaakskksqksaa 105
                                  ++ +s+++++k+ +s+a
  XP_027073408.1 158 glrigasinwgdhDHHPSEPSGSKTWDSDA 187
                     455555555555533333333333333333 PP

Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    
MIAREIDAAA DVTAKQEGNT ATDEKTSNYK ASISGTSAAA ASSSSSSWSR LKDPRIVRVS  60
RAFGGKDRHS KVCTVRGLRD RRVRLSVPTA VQLYDLQDRL GLSQPSKVVD WLLNAAKHEI  120
DELPPLQMPP GSFNHSFQPV WATHHPVVGA HQVTKDQGLR IGASINWGDH DHHPSEPSGS  180
KTWDSDAILR PKSKELIARS GDSSEDKETW TRSSEEGKQH SNNYESTSHG AAYFSSNNFF  240
SRLGHSTSPS LGLLNSTVLP YNSLIRWDPS NLSLSQSGSP SGLTPVPQPE DFHNFSVVPL  300
PSTMSVPSGG PQVLVYQPAS SITQSYFPSH IAPPVTVDYA QKQIEFQMLN STTENPLTSS  360
LAPPVSDSTS QHAAGRPFRI LSTTTNLLPS QNDRESKQDL DNDFSSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.17e-44TCP family protein