PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073366.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 503aa MW: 54497.2 Da PI: 8.9465

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073366.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.4	7.1e-25	129	173	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_027073366.1 129 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVEG 173 79****************************************985 PP
2	QLQ	62.7	9.9e-22	59	95	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy++an+PvP++Ll +++k XP_027073366.1 59 GPFTPSQWMELEHQALIYKYIIANVPVPSHLLIPLRK 95 59*******************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence
MISFSSQSQI PYFSDEDASK TSAFPFFIAP PDPLCPRTSG YATEKSTEGM RGPFAKFRGP 60 FTPSQWMELE HQALIYKYII ANVPVPSHLL IPLRKSFNPC AFSSLSSGSY GSSSLGWGSF 120 HLGFAGSTDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI NRGRHRSRKP VEGQNGHAVS 180 GSTASKVAXI ASSSSASVMS SSSASNSLGA VHHSFKNLHT RADNASTEHL VSRMQDLHGL 240 SAAGDSINLK SKDSPFSIQK QHXHIWGSSQ TEFGVVSPDS LLNPSQRCSR MSSKTSDSLL 300 GFNDHETPNQ HLLRHFIDKC PKDQSHRASI SWPEELKSDW TQLSMSIPMS TSDFSSSSRS 360 PRQDKPTLSP LRLAREIDPI QMGLSVTKDV VGQNQKQANW LPASWGNSIL GGPLGEVLNS 420 TSSNAGGFKS SSTLNLMTDV WDNSPQMGCS PTGVLQKSTF VSLSNSSSGS SPRTDNKKAP 480 EGATLCDDIL GSTLAHSTSI PSM

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence

MISFSSQSQI PYFSDEDASK TSAFPFFIAP PDPLCPRTSG YATEKSTEGM RGPFAKFRGP  60
FTPSQWMELE HQALIYKYII ANVPVPSHLL IPLRKSFNPC AFSSLSSGSY GSSSLGWGSF  120
HLGFAGSTDP EPGRCRRTDG KKWRCSRDAV PDQKYCERHI NRGRHRSRKP VEGQNGHAVS  180
GSTASKVAXI ASSSSASVMS SSSASNSLGA VHHSFKNLHT RADNASTEHL VSRMQDLHGL  240
SAAGDSINLK SKDSPFSIQK QHXHIWGSSQ TEFGVVSPDS LLNPSQRCSR MSSKTSDSLL  300
GFNDHETPNQ HLLRHFIDKC PKDQSHRASI SWPEELKSDW TQLSMSIPMS TSDFSSSSRS  360
PRQDKPTLSP LRLAREIDPI QMGLSVTKDV VGQNQKQANW LPASWGNSIL GGPLGEVLNS  420
TSSNAGGFKS SSTLNLMTDV WDNSPQMGCS PTGVLQKSTF VSLSNSSSGS SPRTDNKKAP  480
EGATLCDDIL GSTLAHSTSI PSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	7e-86	GRF family protein