PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027073078.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 421aa MW: 47020.5 Da PI: 7.1101

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027073078.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.4e-31	247	301	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt+eLH+rFve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR XP_027073078.1 247 KTRIRWTQELHDRFVECVNHLGGADKATPKAILRLMEWEGLTIFHVKSHLQKYRN 301 68****************************************************6 PP
2	Myb_DNA-binding	49.7	8.5e-16	251	300	3	48
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 rWT+e+++++v++v+ lGg t+k+I r m +g+t ++ks++qky+ XP_027073078.1 251 RWTQELHDRFVECVNHLGGAdkaTPKAILRLMEwEGLTIFHVKSHLQKYR 300 9***************99***************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MNIQKIGSYE RMLQNCGHTS DYASEFSYRF PHSFGNPPES SDMGLCFQSA ARDDGSQRQN 60 FWPNNSSSTI MGQIGSASAF YAAEVYMGLT QLDARDNQST CSTQLSKINH DVHIPSYDQS 120 ENCLFTDSPP RKLEPCSFPA NNALPAVPNS QTPNSQYISS EASYRHPFSD LTEKERLWQL 180 KKKLLGDVDN PNKRQHTMPL QRNQDVGVSC NLYDSHFPNA KPSGRSSGCI SPISTNPASA 240 AGAVTNKTRI RWTQELHDRF VECVNHLGGA DKATPKAILR LMEWEGLTIF HVKSHLQKYR 300 NAKYIPASAE GKSDKGPCTS NAAQIDIKNG MQLKEALQLQ LDVQRRLHDQ LEVQRKLQLS 360 IEEQARQLKL ILDKQQETAK SLLETQNSAI TSPTYLSTTL ENVDILISED SESTPFSSKI 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MNIQKIGSYE RMLQNCGHTS DYASEFSYRF PHSFGNPPES SDMGLCFQSA ARDDGSQRQN  60
FWPNNSSSTI MGQIGSASAF YAAEVYMGLT QLDARDNQST CSTQLSKINH DVHIPSYDQS  120
ENCLFTDSPP RKLEPCSFPA NNALPAVPNS QTPNSQYISS EASYRHPFSD LTEKERLWQL  180
KKKLLGDVDN PNKRQHTMPL QRNQDVGVSC NLYDSHFPNA KPSGRSSGCI SPISTNPASA  240
AGAVTNKTRI RWTQELHDRF VECVNHLGGA DKATPKAILR LMEWEGLTIF HVKSHLQKYR  300
NAKYIPASAE GKSDKGPCTS NAAQIDIKNG MQLKEALQLQ LDVQRRLHDQ LEVQRKLQLS  360
IEEQARQLKL ILDKQQETAK SLLETQNSAI TSPTYLSTTL ENVDILISED SESTPFSSKI  420
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-65	G2-like family protein