PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027073038.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MIKC_MADS
Protein Properties Length: 242aa    MW: 27489.4 Da    PI: 8.4699
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027073038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.23.8e-27959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+ien   rqvtfskRr+g+lKKA+EL +LCdaev vi+fsstgklye++s
  XP_027073038.1  9 KKIENVNSRQVTFSKRRAGLLKKAKELAILCDAEVGVIVFSSTGKLYEFAS 59
                    68***********************************************86 PP

2K-box69.88.3e-24811729100
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      e++++++ q +++ Lk+ei +Lq  qR++ G++L+ L+++eLq+Le+qL++++  ++++K+++lleq+e+++ +e+++  en+aLr+++ee
  XP_027073038.1  81 MENKTENEPQPQADALKSEIAKLQLVQRQMTGKELGGLNFQELQHLEHQLHEGILAVKDRKEQVLLEQLEKSKLQEQKVVLENEALREQVEE 172
                     455666677899*****************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MGRGKIEIKK IENVNSRQVT FSKRRAGLLK KAKELAILCD AEVGVIVFSS TGKLYEFAST  60
RMEQILARYN TNPESSKLIT MENKTENEPQ PQADALKSEI AKLQLVQRQM TGKELGGLNF  120
QELQHLEHQL HEGILAVKDR KEQVLLEQLE KSKLQEQKVV LENEALREQV EEYRLRLYRE  180
NGQLGRKNSG VCSSTVCDCR SEKDGNSDTS LRLGLSVDIC HKRKKPKTES TSNDSETLMV  240
LE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57390.19e-48MIKC_MADS family protein