PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072986.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 340aa MW: 37694.2 Da PI: 5.5873

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.6	1.2e-17	32	79	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEdell d++k+ G g+W+t +++ g+ R++k+c++rw +yl XP_027072986.1 32 RGPWTPEEDELLSDYIKREGEGRWRTLPKKAGLLRCGKSCRLRWMNYL 79 89****************************99**********97 PP
2	Myb_DNA-binding	45	2.6e-14	91	130	7	48
HHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 7 eEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_027072986.1 91 DEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 130 8*************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MRNPSSKPQA AAAANSTGAG ASSNKTKVGL KRGPWTPEED ELLSDYIKRE GEGRWRTLPK 60 KAGLLRCGKS CRLRWMNYLR PSVKRGHIAW DEEDLILRLH RLLGNRWSLI AGRIPGRTDN 120 EIKNYWNTHL SKKLISQGID PRTHKPLEPN YSDSNNENKA SSSKLHHAVA DHPSSSSYEP 180 SAAVVIKDSR DASTSNIPID GIEFNSDDQY QNPETTAGEV HVNMQNADHE GDVTYGMDLR 240 SSHEGFSNED DDDTNYCTDD IFSSFLNSLI NEDAFNSPNL LQQQQLQPNS TSTATDCDAL 300 ISSTTAFTFG PGWDAPSVAS TSSSDHNDPK LTNEKVEKQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	6e-77	MYB family protein