PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072968.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 417aa    MW: 45108.1 Da    PI: 6.9959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072968.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.2e-064151425
                    --TTTTT-SS-S CS
         zf-CCCH 14 tCkyGdrCkFaH 25
                     C+yGdrCkF H
  XP_027072968.1  4 SCQYGDRCKFLH 15
                    7*********** PP
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    
MSSSCQYGDR CKFLHAAQTP ARQNPFGLGM QTGNQFQHAN LQQQKPNPFG FGAQNSSQPR  60
GAGDFSSKQN QFKAFENKWT RSSQANTGNS AASRQPDNQP PSHKCTDPES CKRQILEDFE  120
NERPLWKLTC YGHSKYGPCD IVGDISYEEF RATAYDDAKR GLSLQSIVER ERNLLNSKLV  180
EFDSLLRSPY KGSSNSAIGL QSPFPISVRN TSVSAQNSNP PSFSSFSQLG TSLGGGATAS  240
PNNFFGQQHA FQSTSQTSST FKMTNSPFQN SGFGSQLPSQ TLQSPFASGS ASFGNSSVNT  300
LQNPLFASPV SAQTSTLSNA SNNNMKSGFA SFSNSSVQNP FSTSTVSSQS SIFGDNTNAL  360
FSVNANVNEV GLSAGNIDLN RLATPEENLN GDNSIWRKEE WGIGEIPEAE PPVEYCR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-62C3H family protein