PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027072966.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 428aa MW: 46473.8 Da PI: 7.9885 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.1 | 2.5e-12 | 3 | 26 | 1 | 25 |
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +k elCr+f+r G C+yGdrCkF H XP_027072966.1 3 PKKELCRNFLR-GSCQYGDRCKFLH 26 699********.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence |
MPPKKELCRN FLRGSCQYGD RCKFLHAAQT PARQNPFGLG MQTGNQFQHA NLQQQKPNPF 60 GFGAQNSSQP RGAGDFSSKQ NQFKAFENKW TRSSQANTGN SAASRQPDNQ PPSHKCTDPE 120 SCKRQILEDF ENERPLWKLT CYGHSKYGPC DIVGDISYEE FRATAYDDAK RGLSLQSIVE 180 RERNLLNSKL VEFDSLLRSP YKGSSNSAIG LQSPFPISVR NTSVSAQNSN PPSFSSFSQL 240 GTSLGGGATA SPNNFFGQQH AFQSTSQTSS TFKMTNSPFQ NSGFGSQLPS QTLQSPFASG 300 SASFGNSSVN TLQNPLFASP VSAQTSTLSN ASNNNMKSGF ASFSNSSVQN PFSTSTVSSQ 360 SSIFGDNTNA LFSVNANVNE VGLSAGNIDL NRLATPEENL NGDNSIWRKE EWGIGEIPEA 420 EPPVEYCR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75340.1 | 4e-70 | C3H family protein |