PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072907.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 517aa MW: 56236 Da PI: 6.7799

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.1	2.4e-25	207	262	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+++Hnh+ XP_027072907.1 207 DGYNWRKYGQKQVKSPQGSRSYYRCTYSECCAKK-IECSDDSNRVMEIVYRSHHNHD 262 9*****************************98.*******************7 PP
2	WRKY	100.5	1e-31	379	436	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++er+++++++v+itY+g H+h+ XP_027072907.1 379 ADGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIERAKDNTNAVIITYKGVHDHD 436 6********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence
MDAKNFNSDN NSSNKSPSCE EEDEAAAQNS KSREEFDENS RGGGGDGYEQ VNSKTVDNSS 60 IPVVVAQMSN NRASSTPETL ATAASSDLHC KFEVAVDNEM QRLEPAEELK DQVGMSYQEE 120 FRIIADQAVP DQTQNQQEPP NGPRSSEPSP TSVTQPISSV PSPTLPEQKM SPGDNRNTSH 180 TSEADKKNSF DPKTLSVVSI QKTPSPDGYN WRKYGQKQVK SPQGSRSYYR CTYSECCAKK 240 IECSDDSNRV MEIVYRSHHN HDPPQKVNCT RGSRHSLSIA PANGSDSSVA PIGATADSAP 300 STSSKDSVQE KVSVPDPIQK DSSDSDDNAE TNIKQEREDE PEPSKRLKKT VASCSAPLLK 360 PGKKPKIVVH AASDVGISAD GYRWRKYGQK MVKGNPHPRN YYRCTSAGCP VRKHIERAKD 420 NTNAVIITYK GVHDHDMPVP KKRHGPPSAP LVAAAAPASM STVQVVKSET IQNQVSATQW 480 SVDKEGGLKG QTLECGGEKN VESARTLLSI GFEIKPC

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence

MDAKNFNSDN NSSNKSPSCE EEDEAAAQNS KSREEFDENS RGGGGDGYEQ VNSKTVDNSS  60
IPVVVAQMSN NRASSTPETL ATAASSDLHC KFEVAVDNEM QRLEPAEELK DQVGMSYQEE  120
FRIIADQAVP DQTQNQQEPP NGPRSSEPSP TSVTQPISSV PSPTLPEQKM SPGDNRNTSH  180
TSEADKKNSF DPKTLSVVSI QKTPSPDGYN WRKYGQKQVK SPQGSRSYYR CTYSECCAKK  240
IECSDDSNRV MEIVYRSHHN HDPPQKVNCT RGSRHSLSIA PANGSDSSVA PIGATADSAP  300
STSSKDSVQE KVSVPDPIQK DSSDSDDNAE TNIKQEREDE PEPSKRLKKT VASCSAPLLK  360
PGKKPKIVVH AASDVGISAD GYRWRKYGQK MVKGNPHPRN YYRCTSAGCP VRKHIERAKD  420
NTNAVIITYK GVHDHDMPVP KKRHGPPSAP LVAAAAPASM STVQVVKSET IQNQVSATQW  480
SVDKEGGLKG QTLECGGEKN VESARTLLSI GFEIKPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	1e-113	WRKY family protein