PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072617.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 465aa MW: 51256 Da PI: 8.9585

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072617.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.4	1.3e-32	194	250	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers d+++ ei+Y+geH h+k XP_027072617.1 194 DGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSL-DGQIAEIVYKGEHSHPK 250 9*************************************.*************85 PP
2	WRKY	102.7	2e-32	382	439	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsYYrCts +C+v+k ver+++dp+++ +tYeg+Hnhe XP_027072617.1 382 RDGFRWRKYGQKVVKGNPYPRSYYRCTSLKCNVRKYVERTSDDPNAFMTTYEGKHNHE 439 7********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MEIKETEKVA IAKPVASRPT CSGFKSFSEL LAGAINASPS STCSEAAVTA IRPRTVRFKP 60 AVDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCKVVYK PMAKLVSKTT VSLLANMRSA 120 NLFQEQELAE VEANFQLPNL VKPQCDNRSE PHQNFLSAAQ KNKRVEPSNV TTQNLEEDQR 180 SLAHTANGDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI 240 VYKGEHSHPK TQPVRRNSSD GHWQGTSGNE SNNPLCRNQH SDKNECYEGT MENPNEFGFL 300 AHSSYSGGAP SCMHPTNGDL DNSSCHSGEF DEGREGLEGE TEGPKRKRRK NDNQSNVAGT 360 AAEGAQEPQV LGQNSTDSEI IRDGFRWRKY GQKVVKGNPY PRSYYRCTSL KCNVRKYVER 420 TSDDPNAFMT TYEGKHNHEM PTKSTSSLAA KTSTKALGTK KIYLD

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MEIKETEKVA IAKPVASRPT CSGFKSFSEL LAGAINASPS STCSEAAVTA IRPRTVRFKP  60
AVDHPSAGVA ASQANLCGAA VSSPTAKDLK ADGKCKVVYK PMAKLVSKTT VSLLANMRSA  120
NLFQEQELAE VEANFQLPNL VKPQCDNRSE PHQNFLSAAQ KNKRVEPSNV TTQNLEEDQR  180
SLAHTANGDR PSYDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCPVKKKVE RSLDGQIAEI  240
VYKGEHSHPK TQPVRRNSSD GHWQGTSGNE SNNPLCRNQH SDKNECYEGT MENPNEFGFL  300
AHSSYSGGAP SCMHPTNGDL DNSSCHSGEF DEGREGLEGE TEGPKRKRRK NDNQSNVAGT  360
AAEGAQEPQV LGQNSTDSEI IRDGFRWRKY GQKVVKGNPY PRSYYRCTSL KCNVRKYVER  420
TSDDPNAFMT TYEGKHNHEM PTKSTSSLAA KTSTKALGTK KIYLD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	344	351	PKRKRRKN
2	345	350	KRKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	1e-107	WRKY family protein