PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072583.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 426aa MW: 46397 Da PI: 7.1873

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.3	4.3e-26	173	216	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_027072583.1 173 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 216 79***************************************987 PP
2	QLQ	43.1	1.3e-15	95	127	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +F+ aQ+q+L+ Q+l++++++a++ vPpeLl + XP_027072583.1 95 YFSLAQWQELELQALIFRHMLAGAAVPPELLHH 127 7*****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MDFNLKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI 60 SKLSSNLSAP YPNPTDSTPT PTKYPGEAGG MGSYYFSLAQ WQELELQALI FRHMLAGAAV 120 PPELLHHLVK KTLLNSSHHH HPYYAPHHHR HHYPPHFQSA LLQSGYWGRA SMDPEPGRCR 180 RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVEIPTT RTATPGNGGA NVCGGILKNS 240 SFLVAQPLGS AMAAGGSVAG DTPHSAISGS SPSIDILHLS QSRSSESIVR SQDDVHGDDT 300 RSSGQILRHF FDDWPRSLQE SDDGGSNGTS ATTNLSISVS GNPTTSDFSL KLSTGDGDDT 360 TDAENVEWER SQSNWGVTGA WGANQVAPMG GPLAEALRSS TSNSSPTSVL HQLQRRSASE 420 TSYVST

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MDFNLKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI  60
SKLSSNLSAP YPNPTDSTPT PTKYPGEAGG MGSYYFSLAQ WQELELQALI FRHMLAGAAV  120
PPELLHHLVK KTLLNSSHHH HPYYAPHHHR HHYPPHFQSA LLQSGYWGRA SMDPEPGRCR  180
RTDGKKWRCS RDVVAGQKYC ERHMHRGRNR SRKPVEIPTT RTATPGNGGA NVCGGILKNS  240
SFLVAQPLGS AMAAGGSVAG DTPHSAISGS SPSIDILHLS QSRSSESIVR SQDDVHGDDT  300
RSSGQILRHF FDDWPRSLQE SDDGGSNGTS ATTNLSISVS GNPTTSDFSL KLSTGDGDDT  360
TDAENVEWER SQSNWGVTGA WGANQVAPMG GPLAEALRSS TSNSSPTSVL HQLQRRSASE  420
TSYVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	5e-57	GRF family protein