PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072581.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

GRF

Protein Properties

Length: 429aa MW: 46739.4 Da PI: 7.3096

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072581.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	82.3	4.3e-26	176	219	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v++g+k+CErH+hrgr+rsrk++e XP_027072581.1 176 DPEPGRCRRTDGKKWRCSRDVVAGQKYCERHMHRGRNRSRKPVE 219 79***************************************987 PP
2	QLQ	43.1	1.3e-15	98	130	2	34
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqa 34 +F+ aQ+q+L+ Q+l++++++a++ vPpeLl + XP_027072581.1 98 YFSLAQWQELELQALIFRHMLAGAAVPPELLHH 130 7*****************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
MDFNLKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI 60 SKLSSNLSAP YPNPTDSTPT PTKYPVRSGE AGGMGSYYFS LAQWQELELQ ALIFRHMLAG 120 AAVPPELLHH LVKKTLLNSS HHHHPYYAPH HHRHHYPPHF QSALLQSGYW GRASMDPEPG 180 RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG RNRSRKPVEI PTTRTATPGN GGANVCGGIL 240 KNSSFLVAQP LGSAMAAGGS VAGDTPHSAI SGSSPSIDIL HLSQSRSSES IVRSQDDVHG 300 DDTRSSGQIL RHFFDDWPRS LQESDDGGSN GTSATTNLSI SVSGNPTTSD FSLKLSTGDG 360 DDTTDAENVE WERSQSNWGV TGAWGANQVA PMGGPLAEAL RSSTSNSSPT SVLHQLQRRS 420 ASETSYVST

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

MDFNLKQWRE HHQGESDQEH TTPCAKIPRL HLDYSVYPQH QPPSGDSSAL PLFVTEPTSI  60
SKLSSNLSAP YPNPTDSTPT PTKYPVRSGE AGGMGSYYFS LAQWQELELQ ALIFRHMLAG  120
AAVPPELLHH LVKKTLLNSS HHHHPYYAPH HHRHHYPPHF QSALLQSGYW GRASMDPEPG  180
RCRRTDGKKW RCSRDVVAGQ KYCERHMHRG RNRSRKPVEI PTTRTATPGN GGANVCGGIL  240
KNSSFLVAQP LGSAMAAGGS VAGDTPHSAI SGSSPSIDIL HLSQSRSSES IVRSQDDVHG  300
DDTRSSGQIL RHFFDDWPRS LQESDDGGSN GTSATTNLSI SVSGNPTTSD FSLKLSTGDG  360
DDTTDAENVE WERSQSNWGV TGAWGANQVA PMGGPLAEAL RSSTSNSSPT SVLHQLQRRS  420
ASETSYVST

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-56	GRF family protein