PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072395.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 259aa    MW: 28253.5 Da    PI: 7.4344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.40.00031241621255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  XP_027072395.1 124 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 162
                     6678889999999999998.....8******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    
MHAKKTLENW EEQLLQQQPP NGSNIVDHVK QENSAANGAY NMYGHENAEF HAAKTTWSQM  60
MPVSSPTSCV TTLSSNMLDF SSSKSDGRHP PPDRSSECNS TAIGGASKKA RVQPSSTQSS  120
FKVRKEKLGD RITALHQLVS PFGKTDTASV LLEAIGYIRF LQSQIEALSS PYLGSKSGNV  180
RQQQSAQGER NCLFPEDPGQ LLNDNCMKRK AACEQDSEEE VKKDLRSRGL CLVPISCTLQ  240
VGSDNGADYW APALGGGFR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.11e-93bHLH family protein