PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072381.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

CO-like

Protein Properties

Length: 413aa MW: 44835.1 Da PI: 7.3058

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072381.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.8	3.4e-06	29	69	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ +++ + lfC++++ ++C +C ++ H H+ XP_027072381.1 29 KPCDCCSSAAALLFCRTDSLFMCMTCDSKMHATnkigsrHE 69 57****99*****************996556666666 PP
2	zf-B_box	25.5	2.8e-08	71	116	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ +++ C+ + lC +C +H+ H+++p+ XP_027072381.1 71 VWMCEVCEQAPASVTCKADAAALCVTCDHDIHSAnplarrHERSPV 116 689*****************************66888888998875 PP
3	CCT	69.4	9.4e-24	339	383	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae XP_027072381.1 339 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRAE 383 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MGRVAEDGGG TGVVANNRGV PAAWGLVAKP CDCCSSAAAL LFCRTDSLFM CMTCDSKMHA 60 TNKIGSRHER VWMCEVCEQA PASVTCKADA AALCVTCDHD IHSANPLARR HERSPVVPFY 120 DTAESVVKST AATLLVPLPP PAVNNSSNTG ANNMVNDTCH GHDAKMTTCF AHESYMSDPW 180 ISSNPMNSKL PTDAPEIKSV EFLFSDSDNY LDFDYRISSG ARIQQHYTSS GTDGVVPVQT 240 TKPPFLPAQL PGHHQPSEKH FEIDFTKSHI SSYTPSYTSH SLSQSVSSSS LDVGVVPDGS 300 SVSEISYPFG RNLSGSTADL SGSSSGGNNQ GSQLPGMDRE ARVLRYREKR KNRKFEKTIR 360 YASRKAYAET RPRIKGRFAK RAEAIESEID QMFTCPGSAA FFPESRYGVV PSF

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MGRVAEDGGG TGVVANNRGV PAAWGLVAKP CDCCSSAAAL LFCRTDSLFM CMTCDSKMHA  60
TNKIGSRHER VWMCEVCEQA PASVTCKADA AALCVTCDHD IHSANPLARR HERSPVVPFY  120
DTAESVVKST AATLLVPLPP PAVNNSSNTG ANNMVNDTCH GHDAKMTTCF AHESYMSDPW  180
ISSNPMNSKL PTDAPEIKSV EFLFSDSDNY LDFDYRISSG ARIQQHYTSS GTDGVVPVQT  240
TKPPFLPAQL PGHHQPSEKH FEIDFTKSHI SSYTPSYTSH SLSQSVSSSS LDVGVVPDGS  300
SVSEISYPFG RNLSGSTADL SGSSSGGNNQ GSQLPGMDRE ARVLRYREKR KNRKFEKTIR  360
YASRKAYAET RPRIKGRFAK RAEAIESEID QMFTCPGSAA FFPESRYGVV PSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24930.1	2e-86	CO-like family protein