PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072271.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 702aa    MW: 77129.4 Da    PI: 5.9855
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072271.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.6e-08280300526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ GtC++Gd C +aHg
  XP_027072271.1 280 PCPDFRK-GTCRRGDMCEYAHG 300
                     8******.*************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    
MDMNHLTVET EDVLASVLEL AANNDMDGFK RWVEPDPTSV DEVGLWYGRQ KGSKQMVLEE  60
RTPLMVAATY GSIDVLELIL SLPEIDVNRS CGLDKSTALH CAASGGSIKA VDAVKLLLAA  120
GADPNLMDIN GHRPIDVIIV CPKFQERKLL LEKLLSTEAS LGDHRLRVST TTSNSNSNSP  180
PLSPSPGNGS PSSHSDSTSS PKISDLPASS MSEKKEYPVD PSLPDIKNSI YSTDEFRMYS  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGTCR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTQEEMRPLY VSTGSAVPSP RTGPSSTNAV  360
DFAGMNFLPG SPSSVTMMSP SPFTPPMSPS TNGIANMGWA QPNAPALHLP GSNLQSSRLR  420
SSFNARDIPT EDLNMLSEFD VQQQQFLDEI SRISQPNINS SSLNRTSRPK TMTPSNLEDL  480
FNVEGLSPRY SDQALATAVF SPTHKSAVLN QFQQQQQSML SPINTNFSPK SVDHSLLQAS  540
FGVSSSGRMS PRSMDPISPM SSRVSMLAQR EQQQQQQPQQ QFRSLSSRDL GSSSAAVVGS  600
PADTWSNWGS SMGKPDWAVS TEFGRLKRSS SFELGNEEPD LSWVQSLVRD SPQEMKEKSV  660
QYVAGAATSA EGANLDHQID QMDPSALTAL LDQMQLDHLI AQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0C3H family protein