PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072210.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 306aa    MW: 33560.6 Da    PI: 4.5457
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072210.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.70.00083279302123
                     EEETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                     ++C+ C++ F +   L++H +  H
  XP_027072210.1 279 HTCKTCSRGFGSENALESHTKAkH 302
                     79*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEFWAAEVKG GEPFKVEPGE GMVLHLSQAS IGEVKKEKGN ETICLFVNVD GQRLVLGTLF  60
SEKLPQQQFD LVFDRNFELS HNWKSGSVYF YGYRANNPFD EEDDGGDFDS DSEEEIPLTI  120
ANNGKPEIKV KEDKPADNKK AKAEKDSKQK VKIVEPNLDL LKRDGNEDSS DEDDDSSDED  180
DDASLDEVLN LKDEDESDTD GDDESDESDE ETPKKVEISK KRAIESAVKT PGPDKKAKLT  240
TPQKTDGKKG SGHVATPHPA KQAGKNKNQQ TPKSGGGSHT CKTCSRGFGS ENALESHTKA  300
KHSAGK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-32C2H2 family protein