PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072186.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 1075aa MW: 118433 Da PI: 6.5462

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072186.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.4	9.8e-22	134	235	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ ++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_027072186.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfTLQPPA-QELVARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225 99***************************9666655.49********************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_027072186.1 226 QQLLLGIRRA 235 889**997 PP
2	Auxin_resp	117.1	1.5e-38	260	343	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+ XP_027072186.1 260 AAHAAANNSPFVVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 343 79****************************998669******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MKTPATGAGA PSAAALANPS EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP EFDKDALLRS 120 DLSTKVNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFTLQPP AQELVARDLH 180 ENLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF VVFYNPRASP SEFVIPLAKY YKAVCSNQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PLRWKNSQWR NLQVGWDEST AGERRNRVSI 360 WEIEPVTAPF FICPTPSFFR PKRPRQPGMP DDDLSDLDSL FKRTMPWLGE DFGMKDPQAL 420 PGMSLVQWMN MQQNPSLANT AQPNYLHSLP GSVMQNIAGA DLSRQLGLPA PQAPQQNTLQ 480 FAQRPTQQPQ HLDQLQNLPA STLNPLGSII QPQQQLPDIS QQPRQPLINQ SLPTCQVQAQ 540 LLQAQNLVQS QNVLQQQQQS SHQLQRSLSQ NLQPLQPQQQ QQLMCQNSQQ NLLPSQSQDP 600 ISQKLNFSEN PIQLQLLQKL HQQQQSLLAQ QSAMQQPSQL TQLHDQQKPL LDAPPSFSRA 660 LTSSQIQDVS QPIPTSIPQS HVIPQQITRT NSQNNLRFNQ RTQQPKLQQQ QSGVVPEVHG 720 HVGHSLTATT NHLSATGSSL LTGTAGGGPS GITDDIPSCS TSPSTNNCPN GVQPSMNGRT 780 HRGTATGDEI AQPSAALLSS SGLETMSASG AQMEYLDTQS SATSVCLSQN DVQLPHGTNQ 840 MSFNSQPVLF RDTSQEVQAD PRNNVSFGAN IDNQFGMAMM PDSVSTKGML GSGKDFSSNL 900 DAGGGMISSY ENPKETQPEL SSSMVSQSFG VPDMTFNSID SAINDGNFMN RGPWAPTQLP 960 RMRTYTKVYK RGAVGRSIDI TRYSGYEELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN 1020 DVLLVGDDPW EEFVNCVRYI KILSPQEVQQ MSLDGDFGNS VLPNQACSSS DGGNV

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MKTPATGAGA PSAAALANPS EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP EFDKDALLRS  120
DLSTKVNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFTLQPP AQELVARDLH  180
ENLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF VVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PLRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPSFFR PKRPRQPGMP DDDLSDLDSL FKRTMPWLGE DFGMKDPQAL  420
PGMSLVQWMN MQQNPSLANT AQPNYLHSLP GSVMQNIAGA DLSRQLGLPA PQAPQQNTLQ  480
FAQRPTQQPQ HLDQLQNLPA STLNPLGSII QPQQQLPDIS QQPRQPLINQ SLPTCQVQAQ  540
LLQAQNLVQS QNVLQQQQQS SHQLQRSLSQ NLQPLQPQQQ QQLMCQNSQQ NLLPSQSQDP  600
ISQKLNFSEN PIQLQLLQKL HQQQQSLLAQ QSAMQQPSQL TQLHDQQKPL LDAPPSFSRA  660
LTSSQIQDVS QPIPTSIPQS HVIPQQITRT NSQNNLRFNQ RTQQPKLQQQ QSGVVPEVHG  720
HVGHSLTATT NHLSATGSSL LTGTAGGGPS GITDDIPSCS TSPSTNNCPN GVQPSMNGRT  780
HRGTATGDEI AQPSAALLSS SGLETMSASG AQMEYLDTQS SATSVCLSQN DVQLPHGTNQ  840
MSFNSQPVLF RDTSQEVQAD PRNNVSFGAN IDNQFGMAMM PDSVSTKGML GSGKDFSSNL  900
DAGGGMISSY ENPKETQPEL SSSMVSQSFG VPDMTFNSID SAINDGNFMN RGPWAPTQLP  960
RMRTYTKVYK RGAVGRSIDI TRYSGYEELK QDLARRFGIE GQLEDRQRIG WKLVYVDHEN  1020
DVLLVGDDPW EEFVNCVRYI KILSPQEVQQ MSLDGDFGNS VLPNQACSSS DGGNV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein