PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072185.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family ARF
Protein Properties Length: 1112aa    MW: 122502 Da    PI: 6.7185
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072185.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.31e-21134235199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++       ++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_027072185.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfTLQPPA-QELVARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225
                     99*****************************9666655.49************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_027072185.1 226 QQLLLGIRRA 235
                     889****997 PP

2Auxin_resp1171.6e-38260343183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F v+YnPras+seFv++++k+ ka+  +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+
  XP_027072185.1 260 AAHAAANNSPFVVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 343
                     79******************************998669********************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 1112 aa     Download sequence    
MKTPATGAGA PSAAALANPS EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP EFDKDALLRS  120
DLSTKVNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFTLQPP AQELVARDLH  180
ENLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF VVFYNPRASP SEFVIPLAKY YKAVCSNQIS  300
LGMRFRMMFE TEESGTRRYM GTITGISDLD PLRWKNSQWR NLQVGWDEST AGERRNRVSI  360
WEIEPVTAPF FICPTPSFFR PKRPRQPGMP DDDLSDLDSL FKRTMPWLGE DFGMKDPQAL  420
PGMSLVQWMN MQQNPSLANT AQPNYLHSLP GSVMQNIAGA DLSRQLGLPA PQAPQQNTLQ  480
FAQRPTQQPQ HLDQLQNLPA STLNPLGSII QPQQQLPDIS QQPRQPLINQ SLPTCQVQAQ  540
LLQAQNLVQS QNVLQQQQQS SHQLQRSLSQ NLQPLQPQQQ QQLMCQNSQQ NLLPSQSQDP  600
ISQKLNFSEN PIQLQLLQKL HQQQQSLLAQ QSAMQQPSQL TQLHDQQKPL LDAPPSFSRA  660
LTSSQIQDVS QPIPTSIPQS HVIPQQITRT NSQNNLRFNQ RTQQPKLQQQ QSGVVPEVHG  720
HVGHSLTATT NHLSATGSSL LTGTAGGGPS GITDDIPSCS TSPSTNNCPN GVQPSMNGRT  780
HRGTATGDEI AQPSAALLSS SGLETMSASG NLVKDLLQKP DVKPSLNVSK SQNQGFFAHQ  840
TYLNASGAQM EYLDTQSSAT SVCLSQNDVQ LPHGTNQMSF NSQPVLFRDT SQEVQADPRN  900
NVSFGANIDN QFGMAMMPDS VSTKGMLGSG KDFSSNLDAG GGMISSYENP KETQPELSSS  960
MVSQSFGVPD MTFNSIDSAI NDGNFMNRGP WAPTQLPRMR TYTKVYKRGA VGRSIDITRY  1020
SGYEELKQDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL LVGDDPWEEF VNCVRYIKIL  1080
SPQEVQQMSL DGDFGNSVLP NQACSSSDGG NV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0ARF family protein