PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027072185.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 1112aa MW: 122502 Da PI: 6.7185 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 68.3 | 1e-21 | 134 | 235 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ ++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_027072185.1 134 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfTLQPPA-QELVARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 225 99*****************************9666655.49************************************************..5688 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 ++l+++++r+ XP_027072185.1 226 QQLLLGIRRA 235 889****997 PP | |||||||
2 | Auxin_resp | 117 | 1.6e-38 | 260 | 343 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F v+YnPras+seFv++++k+ ka+ +++s+GmRf+m+fete+s +rr++Gt++g+sdldp+rW+nS+Wr+L+ XP_027072185.1 260 AAHAAANNSPFVVFYNPRASPSEFVIPLAKYYKAVCsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPLRWKNSQWRNLQ 343 79******************************998669********************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1112 aa Download sequence |
MKTPATGAGA PSAAALANPS EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV 60 AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP EFDKDALLRS 120 DLSTKVNKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PSLDFTLQPP AQELVARDLH 180 ENLWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT 240 NLSSSVLSSD SMHIGILAAA AHAAANNSPF VVFYNPRASP SEFVIPLAKY YKAVCSNQIS 300 LGMRFRMMFE TEESGTRRYM GTITGISDLD PLRWKNSQWR NLQVGWDEST AGERRNRVSI 360 WEIEPVTAPF FICPTPSFFR PKRPRQPGMP DDDLSDLDSL FKRTMPWLGE DFGMKDPQAL 420 PGMSLVQWMN MQQNPSLANT AQPNYLHSLP GSVMQNIAGA DLSRQLGLPA PQAPQQNTLQ 480 FAQRPTQQPQ HLDQLQNLPA STLNPLGSII QPQQQLPDIS QQPRQPLINQ SLPTCQVQAQ 540 LLQAQNLVQS QNVLQQQQQS SHQLQRSLSQ NLQPLQPQQQ QQLMCQNSQQ NLLPSQSQDP 600 ISQKLNFSEN PIQLQLLQKL HQQQQSLLAQ QSAMQQPSQL TQLHDQQKPL LDAPPSFSRA 660 LTSSQIQDVS QPIPTSIPQS HVIPQQITRT NSQNNLRFNQ RTQQPKLQQQ QSGVVPEVHG 720 HVGHSLTATT NHLSATGSSL LTGTAGGGPS GITDDIPSCS TSPSTNNCPN GVQPSMNGRT 780 HRGTATGDEI AQPSAALLSS SGLETMSASG NLVKDLLQKP DVKPSLNVSK SQNQGFFAHQ 840 TYLNASGAQM EYLDTQSSAT SVCLSQNDVQ LPHGTNQMSF NSQPVLFRDT SQEVQADPRN 900 NVSFGANIDN QFGMAMMPDS VSTKGMLGSG KDFSSNLDAG GGMISSYENP KETQPELSSS 960 MVSQSFGVPD MTFNSIDSAI NDGNFMNRGP WAPTQLPRMR TYTKVYKRGA VGRSIDITRY 1020 SGYEELKQDL ARRFGIEGQL EDRQRIGWKL VYVDHENDVL LVGDDPWEEF VNCVRYIKIL 1080 SPQEVQQMSL DGDFGNSVLP NQACSSSDGG NV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |