PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072032.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 302aa    MW: 34322.8 Da    PI: 7.9313
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072032.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08107150755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +E+rRR+ +N+ f  L ++lP       +K + ++i  +A +YI++L+
  XP_027072032.1 107 LAEKRRRETLNKQFIALSTILPGI-----TKTDRISIMGEALKYINQLK 150
                     68********************97.....7*****************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MDPFTDFSPE DIEATLGDNC ELDYFLEEKD LFPAFLDQLF SGNSFFTPEN LSSPCKSSSS  60
GVDRIDDKLP LSCMPEQLND KSPCTSNHKN KIPSLAARRL QYKKNLLAEK RRRETLNKQF  120
IALSTILPGI TKTDRISIMG EALKYINQLK EENNKLKQYN PNQAVVVKKS QVHEEQHSCS  180
ISKSSSVCSD EQLPEIEVRM YEKKILLTIR CEKEKDVLAN ILSEIEKLNL TVISGNIMPF  240
VGITYEIIIV AEVIPVYNPM IKGLCSILIL RKEKRSHEKT GGIKKVFVHR RTAVCSSLIM  300
LY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.25e-26bHLH family protein