PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027072019.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 545aa MW: 60985.6 Da PI: 6.4473

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027072019.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.5	4.7e-17	379	422	5	48
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48 i+ e+l+++ + dAAk++gv++++LKriCR+y I+RWP Rk XP_027072019.1 379 ITREVLEQNSTRRLGDAAKNIGVSQSTLKRICREYDIHRWPPRK 422 899****************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MRRPPYGIHN PNRPFCRIFL NFITSLEISP GQHLEIAIID EALVKVRNIL GIWTASGEIL 60 SLHGGAEFIW KGQGVVGKAF SSKSACFCRD IRQLSITEYP LVPITRRFKY PACFAVCLQS 120 SCPNKCIYVL EFFLPMNEKP DGDLGTLLNE LMETLKESLQ SSFKIASGQE LGQKLTVEVI 180 KVSPEDEFDS FEICSATSIE STPRLGEVQG AEGMMQLDLS CQQVDAANGS MNGIHEQQNG 240 SVGSTPRLAK GMMPVYFSSQ LVDNANACIN GVHAQQGGIV GSPLRLEHVQ GFVNISYQEL 300 NLAGIDVAHN SMNGIYEKRN GVVRSSTQEV VQNMVSIAHD EPIVEDPQRD GARIEQRDNE 360 VTNLKMQKPR CTLKSDLGIT REVLEQNSTR RLGDAAKNIG VSQSTLKRIC REYDIHRWPP 420 RKAGKDTHEH HQSGATRLED DNGMWVKAEY QGCMIKFRLP FSARKIDLEE KVAQRLNLAM 480 GSFKIEYQDE DNDWIWITCD EDLRTFMSTL SSLGRTTIKM VFYVNPNIGY CHSLFSVAVY 540 KVMAS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MRRPPYGIHN PNRPFCRIFL NFITSLEISP GQHLEIAIID EALVKVRNIL GIWTASGEIL  60
SLHGGAEFIW KGQGVVGKAF SSKSACFCRD IRQLSITEYP LVPITRRFKY PACFAVCLQS  120
SCPNKCIYVL EFFLPMNEKP DGDLGTLLNE LMETLKESLQ SSFKIASGQE LGQKLTVEVI  180
KVSPEDEFDS FEICSATSIE STPRLGEVQG AEGMMQLDLS CQQVDAANGS MNGIHEQQNG  240
SVGSTPRLAK GMMPVYFSSQ LVDNANACIN GVHAQQGGIV GSPLRLEHVQ GFVNISYQEL  300
NLAGIDVAHN SMNGIYEKRN GVVRSSTQEV VQNMVSIAHD EPIVEDPQRD GARIEQRDNE  360
VTNLKMQKPR CTLKSDLGIT REVLEQNSTR RLGDAAKNIG VSQSTLKRIC REYDIHRWPP  420
RKAGKDTHEH HQSGATRLED DNGMWVKAEY QGCMIKFRLP FSARKIDLEE KVAQRLNLAM  480
GSFKIEYQDE DNDWIWITCD EDLRTFMSTL SSLGRTTIKM VFYVNPNIGY CHSLFSVAVY  540
KVMAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	8e-23	Nin-like family protein