PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027072016.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 492aa    MW: 55834.4 Da    PI: 7.821
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027072016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.73e-741174864374
            GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl......fsevsPilk 92 
                     lL ++Ae v +++    ++lL++ ++ +s++g p qR+++yf+eAL++++ +++  +++    + ++++  +e+la ++l       ++  P+  
  XP_027072016.1 117 LLQAAAENVVNQQYVYSRKLLNKCNHFSSKSGYPAQRIVHYFAEALREKIDQECGMVASLEDLEGETRRPIDEKLALVSLqpgmmaSQQENPFSL 211
                     6888999999999**************************************9666665544555555555778888777777877788999**** PP

            GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +s++ta   I   v++++rvH i f++ +G +W  ++q +a++   +   l+iT+vg     sk+++eet + L+ fA+++ +pf fn+ v+++l
  XP_027072016.1 212 VSQFTAIGSIRATVATARRVHLINFGLDNGSHWTLIMQDFAAQYnYPIELLKITAVGT----SKQMMEETVKWLSAFADSISLPFTFNI-VVSDL 301
                     *****************************************887356669********....9*************************9.7999* PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     +dl+ ++++++ +E++aV l  +l +ll+ +  le    +++ ++ +l+P+v+vv e ea++n++ Flerf eal ++s +f+s++  + ++   
  XP_027072016.1 302 KDLKEDMFKLEADEVVAVYLDRRLWTLLAWPNYLE----ALIAVISKLKPRVMVVKEMEASTNNPIFLERFHEALIFFSGMFESIKDCMDNHIFY 392
                     ***************************95555555....5*********************************************99998888** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     r+  E+++ ++ i+n++++eg+er++rhe+++ Wr  + ++GF + +ls++    a++ l++ +    +++  + ++l+lgWk+ p +svSaW+
  XP_027072016.1 393 RKLTEEVYCRNMIRNIITAEGKERVHRHERVAFWRTLFAKFGFVETALSQSSFRRASMFLKRSAlYSSFTIYMDGKCLILGWKRTPFISVSAWK 486
                     ****************************************************************9999*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    
MDYIGVEVEN PPLISYLAQA KEECSFMPLT SLELLKQHGN KVKRLREGNL KELNTVKPTN  60
SSGHQALSTA GIMKLARAQL FVLNSQKADV LSSVASCIGA QSALGSEFSE DSGLAILLQA  120
AAENVVNQQY VYSRKLLNKC NHFSSKSGYP AQRIVHYFAE ALREKIDQEC GMVASLEDLE  180
GETRRPIDEK LALVSLQPGM MASQQENPFS LVSQFTAIGS IRATVATARR VHLINFGLDN  240
GSHWTLIMQD FAAQYNYPIE LLKITAVGTS KQMMEETVKW LSAFADSISL PFTFNIVVSD  300
LKDLKEDMFK LEADEVVAVY LDRRLWTLLA WPNYLEALIA VISKLKPRVM VVKEMEASTN  360
NPIFLERFHE ALIFFSGMFE SIKDCMDNHI FYRKLTEEVY CRNMIRNIIT AEGKERVHRH  420
ERVAFWRTLF AKFGFVETAL SQSSFRRASM FLKRSALYSS FTIYMDGKCL ILGWKRTPFI  480
SVSAWKFQYD SE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.15e-48GRAS family protein