PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027071949.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 462aa    MW: 52491.8 Da    PI: 6.7021
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027071949.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS299.48.6e-92814581373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ Ll  A  v+++d e a   L+ l +++  +gd++qR+aayf+ +L arl+   s  y+ +  ++t+    +ee+ a++ f++vsP+++f+h
  XP_027071949.1  81 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAH 171
                     57899999***********************************************9*****999988887....688889999************ PP

            GRAS  96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlv 182
                     +taNq I e +e+e     + +H+iDfdis+G+QWp+L+q+L++ +  ++  sl+iTg+g+    s eel+et+ rL +fA++++ ++fef+ l 
  XP_027071949.1 172 FTANQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL- 261
                     *************989885556*********************877657788*********....******************9559******8. PP

            GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                        l    l +Lr k+ E+++Vnlvl+l +l   +vs   +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+  lp 
  XP_027071949.1 262 ---LRGSMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPV 348
                     ...45555699*****************9997..333...35589************************************************** PP

            GRAS 278 eseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg....yrveee.sgs 357
                     +s +r ++E+  lg+ei++v    +++     r e++e+W+ r+e+ GF+ ++ls++   qaklll+        +++  g    +r+ e+ +g 
  XP_027071949.1 349 DSANRLSIEKNHLGKEIKSVMNYDKDHvnISPRYERMETWKGRMESHGFSGAKLSSRSLIQAKLLLKirshcspiQFD--GgnggFRIFEKaDGK 441
                     *********************99888743568**********************************833322222222..223348876444777 PP

            GRAS 358 lv.lgWkdrpLvsvSaW 373
                     ++ lgW+dr L+++SaW
  XP_027071949.1 442 AIsLGWQDRCLITASAW 458
                     777************** PP

Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    
MSVLEIQAGE DDEFLSLRLT SATDSCSQKI KHKRKRREAD LVRWDLNESS EGKIFSLLEM  60
REQMFNQKKD GGVEDGKGLH LIHSLLISAS SVDENDIESA VDNLCDLYQN VCLSGDSLQR  120
VAAYFADGLV ARLLTRKSPF YDMIMKTPTP EEEFLAFTEF YKVSPFYQFA HFTANQSIIE  180
TFEKEEPNNS RVLHVIDFDI SYGFQWPSLI QSLSEIATAN KRVSLKITGF GRSMEELQET  240
ETRLVSFAKS FRSLNFEFQG LLRGSMLGSL RRKKSETVVV NLVLHLNTLN NVSKISETLK  300
CVNLINPSIV VMVEHEGSRT PQNFLSRFME SLHYFAAMFD SLDDCLPVDS ANRLSIEKNH  360
LGKEIKSVMN YDKDHVNISP RYERMETWKG RMESHGFSGA KLSSRSLIQA KLLLKIRSHC  420
SPIQFDGGNG GFRIFEKADG KAISLGWQDR CLITASAWHC VQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-47GRAS family protein