PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027071949.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 462aa MW: 52491.8 Da PI: 6.7021 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.4 | 8.6e-92 | 81 | 458 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l++ Ll A v+++d e a L+ l +++ +gd++qR+aayf+ +L arl+ s y+ + ++t+ +ee+ a++ f++vsP+++f+h XP_027071949.1 81 LIHSLLISASSVDENDIESAVDNLCDLYQNVCLSGDSLQRVAAYFADGLVARLLTRKSPFYDMIMKTPTP----EEEFLAFTEFYKVSPFYQFAH 171 57899999***********************************************9*****999988887....688889999************ PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg.vpfefnvlv 182 +taNq I e +e+e + +H+iDfdis+G+QWp+L+q+L++ + ++ sl+iTg+g+ s eel+et+ rL +fA++++ ++fef+ l XP_027071949.1 172 FTANQSIIETFEKEepnnsRVLHVIDFDISYGFQWPSLIQSLSEIAtaNKRVSLKITGFGR----SMEELQETETRLVSFAKSFRsLNFEFQGL- 261 *************989885556*********************877657788*********....******************9559******8. PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 l l +Lr k+ E+++Vnlvl+l +l +vs +++e+Lk+v+ ++P +vv+ve+e +++ ++Fl rf+e+l+y++a+fdsl+ lp XP_027071949.1 262 ---LRGSMLGSLRRKKSETVVVNLVLHLNTLN--NVS---KISETLKCVNLINPSIVVMVEHEGSRTPQNFLSRFMESLHYFAAMFDSLDDCLPV 348 ...45555699*****************9997..333...35589************************************************** PP GRAS 278 eseerikvErellgreivnvvacegae..rrerhetlekWrerleeaGFkpvplsekaakqaklllr........kvksdg....yrveee.sgs 357 +s +r ++E+ lg+ei++v +++ r e++e+W+ r+e+ GF+ ++ls++ qaklll+ +++ g +r+ e+ +g XP_027071949.1 349 DSANRLSIEKNHLGKEIKSVMNYDKDHvnISPRYERMETWKGRMESHGFSGAKLSSRSLIQAKLLLKirshcspiQFD--GgnggFRIFEKaDGK 441 *********************99888743568**********************************833322222222..223348876444777 PP GRAS 358 lv.lgWkdrpLvsvSaW 373 ++ lgW+dr L+++SaW XP_027071949.1 442 AIsLGWQDRCLITASAW 458 777************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence |
MSVLEIQAGE DDEFLSLRLT SATDSCSQKI KHKRKRREAD LVRWDLNESS EGKIFSLLEM 60 REQMFNQKKD GGVEDGKGLH LIHSLLISAS SVDENDIESA VDNLCDLYQN VCLSGDSLQR 120 VAAYFADGLV ARLLTRKSPF YDMIMKTPTP EEEFLAFTEF YKVSPFYQFA HFTANQSIIE 180 TFEKEEPNNS RVLHVIDFDI SYGFQWPSLI QSLSEIATAN KRVSLKITGF GRSMEELQET 240 ETRLVSFAKS FRSLNFEFQG LLRGSMLGSL RRKKSETVVV NLVLHLNTLN NVSKISETLK 300 CVNLINPSIV VMVEHEGSRT PQNFLSRFME SLHYFAAMFD SLDDCLPVDS ANRLSIEKNH 360 LGKEIKSVMN YDKDHVNISP RYERMETWKG RMESHGFSGA KLSSRSLIQA KLLLKIRSHC 420 SPIQFDGGNG GFRIFEKADG KAISLGWQDR CLITASAWHC VQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 1e-47 | GRAS family protein |