PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071754.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 350aa MW: 38406.4 Da PI: 8.9673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071754.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.6	3.4e-11	166	211	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ + f L ++P + kK++K ++L A++Y+k+Lq XP_027071754.1 166 HIAAERKRREQLSQQFIALSAMVPGL-----KKMDKTSVLGDAIKYLKYLQ 211 999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MINIVKLWTS SMKPYLLHLE MTSKAPCLEN AAHLHVFPPL FKEAAPAPAC VSSIVMAPPL 60 VVTERPAKQR KPNGCTLSNT HTMFNFDQAS SSPVILTFGN PNVPDISFEQ VSLGNLYPED 120 EVVSGVLASH GSFVNHVGVA AKATAVRTKA KKPGSSTRPP SKSYDHIAAE RKRREQLSQQ 180 FIALSAMVPG LKKMDKTSVL GDAIKYLKYL QERVNTLEEK TTKQTVESVV LVKKSQGLLA 240 EDEGSSDETA NTIDQLSLPE IEVKVCDKKV LLRIRYGNQT GLLTKFICKV EKLNLTVTNT 300 SVAQFRDLAL DITIIAEMDK EFNLTAKELA RCLQSALLPV EFLGKQTNNG

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MINIVKLWTS SMKPYLLHLE MTSKAPCLEN AAHLHVFPPL FKEAAPAPAC VSSIVMAPPL  60
VVTERPAKQR KPNGCTLSNT HTMFNFDQAS SSPVILTFGN PNVPDISFEQ VSLGNLYPED  120
EVVSGVLASH GSFVNHVGVA AKATAVRTKA KKPGSSTRPP SKSYDHIAAE RKRREQLSQQ  180
FIALSAMVPG LKKMDKTSVL GDAIKYLKYL QERVNTLEEK TTKQTVESVV LVKKSQGLLA  240
EDEGSSDETA NTIDQLSLPE IEVKVCDKKV LLRIRYGNQT GLLTKFICKV EKLNLTVTNT  300
SVAQFRDLAL DITIIAEMDK EFNLTAKELA RCLQSALLPV EFLGKQTNNG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	170	175	ERKRRE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-52	bHLH family protein