PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071648.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 796aa MW: 91469.6 Da PI: 8.6089

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071648.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.7e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++ Fsvrk++ +k ++g +t+r++ C keg +++ + + + +rtra t+tgC ak+++ + + + k++v++l+leHnHel XP_027071648.1 26 KFYNKYAFKMSFSVRKDYLNKD-KDGVTTSRRYSCCKEGVKRKYEGD-VMPKRTRAPTKTGCGAKMVIVLFRgTMKYRVHDLVLEHNHEL 113 6***************9998.8999************9999.999***************999**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 796 aa Download sequence
MDCSKLAEDG TPGLGMEFNS GEDAYKFYNK YAFKMSFSVR KDYLNKDKDG VTTSRRYSCC 60 KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH 120 MMSSQRKVSE AQGFQAEISE DAGLSLKQSH ELMGKETGGM GNVGYTREDL KRYLRTRRER 180 SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY KFFGDVVTFD 240 TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL 300 TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYELEEVE 360 QFNRVWEAMV KKHNLENNEW LSGLYKIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH 420 LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFV 480 AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGPERIVV FNRNDLSVYC SCKKYENEGI 540 LCGHALKVFD TVGIKIIPPE YIKRRSTKRA RAGDCFDRRE QEVVADPKVM ISTRYRELAP 600 AMIKVATRAA ISEDTSKVVI TVISDLSKRV ELLLSKSEEQ PLQNQKNLNM EERDKIEIVN 660 EMGEAVVARG IKKRGGGKKS RVMQSWVDKF DRVKRKSRLS RTTQTTVSES EPTSVSFEEY 720 MFMGCRSSTD SVSTHSMSQT VNDPPNVVAP DIDKSQTIHR LANQGPPATA SVPTEWMHPR 780 FSIFSKHNSI RDVLMV

Sequence ? help Back to Top

Protein Sequence Length: 796 aa Download sequence

MDCSKLAEDG TPGLGMEFNS GEDAYKFYNK YAFKMSFSVR KDYLNKDKDG VTTSRRYSCC  60
KEGVKRKYEG DVMPKRTRAP TKTGCGAKMV IVLFRGTMKY RVHDLVLEHN HELHIAQCAH  120
MMSSQRKVSE AQGFQAEISE DAGLSLKQSH ELMGKETGGM GNVGYTREDL KRYLRTRRER  180
SLKYGEAGSM LNYFQEQTLE NPSFFHAVQL DCEEQITNIF WADAGMLIDY KFFGDVVTFD  240
TTYKTNKEYR PLGVFVGFNQ HRQIVIFGAA LMYDETIDSF KWVFGTFLEA MCGKRPSTIL  300
TDQDHAMAAA LSVVMPETFH GLCTFHIRRN FMKHLGNHYK ENSDLPYMFG ACMYELEEVE  360
QFNRVWEAMV KKHNLENNEW LSGLYKIRDK WARCMMKERW TAGMRSTQLS ESLNAAIKNH  420
LKLDHDLVQF FRHFNRVVDE KRHNELIAEY EMRQKLPMVG LRQTPMLVHA SETYSPTVFV  480
AFQNEYGEST AMVILRQQDA AMFVEFAVMR YDGGPERIVV FNRNDLSVYC SCKKYENEGI  540
LCGHALKVFD TVGIKIIPPE YIKRRSTKRA RAGDCFDRRE QEVVADPKVM ISTRYRELAP  600
AMIKVATRAA ISEDTSKVVI TVISDLSKRV ELLLSKSEEQ PLQNQKNLNM EERDKIEIVN  660
EMGEAVVARG IKKRGGGKKS RVMQSWVDKF DRVKRKSRLS RTTQTTVSES EPTSVSFEEY  720
MFMGCRSSTD SVSTHSMSQT VNDPPNVVAP DIDKSQTIHR LANQGPPATA SVPTEWMHPR  780
FSIFSKHNSI RDVLMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-108	FAR1 family protein