PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071545.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 406aa MW: 44935.3 Da PI: 10.2934

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071545.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	36	55	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ G++CkF+H+ XP_027071545.1 36 CRHYLN-GRCQEGEKCKFSHD 55 9999.***********7 PP
2	zf-CCCH	17.2	9e-06	61	83	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C++far + C Gd+C+F H XP_027071545.1 61 KSKPCSYFAR-HSCMKGDNCPFDH 83 6789****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MMQKKERIKR AAKNRELGVK RLKLQPLSKP KTVTYCRHYL NGRCQEGEKC KFSHDTTPLT 60 KSKPCSYFAR HSCMKGDNCP FDHQLSKYPC NNIVTNGFCS RGAGCLFSHE ISAKDGSLPT 120 SNVTKPESKS PTLVSKTISK KQVNNQGVPH QHADAKFSVM ANISGKSTEK KASEHLDRPS 180 AQTPKGICFI SHVRSPPGDT SKHKQAVPHL KGDNSDKVSY SMTRNLEDSI QKSNDLAKGA 240 PSKMPRGINF LLFGKRPLDE SLNRDYGVSE SLLGQVSKSK LVDSPLKSEV RVKIDNQAAQ 300 SSADLELKVN KTANIVSPSS MPQAMKFLSY GKTPVDNPTA ISQRDTLRSI VNVGLPLVQR 360 KEYALDGLKF FPAMPQRSAS SSSHSINHWI NQALEECQAF QRHHSC

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MMQKKERIKR AAKNRELGVK RLKLQPLSKP KTVTYCRHYL NGRCQEGEKC KFSHDTTPLT  60
KSKPCSYFAR HSCMKGDNCP FDHQLSKYPC NNIVTNGFCS RGAGCLFSHE ISAKDGSLPT  120
SNVTKPESKS PTLVSKTISK KQVNNQGVPH QHADAKFSVM ANISGKSTEK KASEHLDRPS  180
AQTPKGICFI SHVRSPPGDT SKHKQAVPHL KGDNSDKVSY SMTRNLEDSI QKSNDLAKGA  240
PSKMPRGINF LLFGKRPLDE SLNRDYGVSE SLLGQVSKSK LVDSPLKSEV RVKIDNQAAQ  300
SSADLELKVN KTANIVSPSS MPQAMKFLSY GKTPVDNPTA ISQRDTLRSI VNVGLPLVQR  360
KEYALDGLKF FPAMPQRSAS SSSHSINHWI NQALEECQAF QRHHSC