PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071500.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 821aa MW: 94405 Da PI: 7.055

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.8	5.1e-25	40	127	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn YA ++GF vrk++ +k + g +t+r+f C+keg+r+++k++ ++++r+raet+tgC a++ v +++ ++ ++vt+++ eHnH+l XP_027071500.1 40 KFYNMYAATIGFGVRKEYCNKD-KLGMVTSRKFACNKEGFRRQDKRD-RETKRPRAETKTGCLACVIVLLDRdTKMYKVTQFVAEHNHPL 127 6****************998.7777*************999.99***********99999998999**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 821 aa Download sequence
MGGRPFIHEM GDKEDQLDMT QKGFIPYYGQ LFDSDDEAYK FYNMYAATIG FGVRKEYCNK 60 DKLGMVTSRK FACNKEGFRR QDKRDRETKR PRAETKTGCL ACVIVLLDRD TKMYKVTQFV 120 AEHNHPLHIP QCVHMIPSQR RTTITQDNSE LVDAYGLSLK QSNNLVDKLG YLPNKRSRGL 180 RFGEAGTIFR YFQQQLLENP SFYFAVQLDS EEQLTNVFWA DARMTIDYKY FGEVVTFDTT 240 FRTNEEYRPL GIFLGFNHHR QMVIFGAALL YDDSVDSYKW LFQTFLEAMS GKPPRTFFTD 300 QEPAMAKASA SVMPNTFHGL CTHHIRQNFL KHLGHMMRTE TGLVQLFSKC MLEIEDEVAF 360 EETWREMLQK HNLDSNTWLK SIYELREKWA KTYMKTKLTL GMRSKQLSKS FNADLKHHLK 420 TDQDLVEFFT EFHRAVEKRR YKELTAEYGA RQKVPSLKIK YSPMLNQVAE IYTPTIFEEF 480 QDEFDVSLAL VVKGHTVNDN VHEYMLARYN GGDDQRVICE KSTQSVLCSC QKYECEGILC 540 SHAIKVLDLL NIKLVPNDLI EKRWTRDAKK GILKGPNQEN DMEEDVHLKV VGRYRMLCST 600 LVRVAIRAAE CQEATDYLVQ CVDKLTRKVE EICNKQMSIE QASTNHQSSY NATDQEDVLV 660 ISMDVNPSGS KSGQGCKSNK RTGSWTDMFG EKSMYESNNN QVQVIADQSQ EVSVDHVSSP 720 QSANNSVSAR SCSQSTSDPL HLHQATTCPS QDSNSNSLFG QSSVEVVQRA NNGAVLENRN 780 FLMNFNGLGT AMSPTGTQFL MVKQSIFYYH HMYLQSLYLC D

Sequence ? help Back to Top

Protein Sequence Length: 821 aa Download sequence

MGGRPFIHEM GDKEDQLDMT QKGFIPYYGQ LFDSDDEAYK FYNMYAATIG FGVRKEYCNK  60
DKLGMVTSRK FACNKEGFRR QDKRDRETKR PRAETKTGCL ACVIVLLDRD TKMYKVTQFV  120
AEHNHPLHIP QCVHMIPSQR RTTITQDNSE LVDAYGLSLK QSNNLVDKLG YLPNKRSRGL  180
RFGEAGTIFR YFQQQLLENP SFYFAVQLDS EEQLTNVFWA DARMTIDYKY FGEVVTFDTT  240
FRTNEEYRPL GIFLGFNHHR QMVIFGAALL YDDSVDSYKW LFQTFLEAMS GKPPRTFFTD  300
QEPAMAKASA SVMPNTFHGL CTHHIRQNFL KHLGHMMRTE TGLVQLFSKC MLEIEDEVAF  360
EETWREMLQK HNLDSNTWLK SIYELREKWA KTYMKTKLTL GMRSKQLSKS FNADLKHHLK  420
TDQDLVEFFT EFHRAVEKRR YKELTAEYGA RQKVPSLKIK YSPMLNQVAE IYTPTIFEEF  480
QDEFDVSLAL VVKGHTVNDN VHEYMLARYN GGDDQRVICE KSTQSVLCSC QKYECEGILC  540
SHAIKVLDLL NIKLVPNDLI EKRWTRDAKK GILKGPNQEN DMEEDVHLKV VGRYRMLCST  600
LVRVAIRAAE CQEATDYLVQ CVDKLTRKVE EICNKQMSIE QASTNHQSSY NATDQEDVLV  660
ISMDVNPSGS KSGQGCKSNK RTGSWTDMFG EKSMYESNNN QVQVIADQSQ EVSVDHVSSP  720
QSANNSVSAR SCSQSTSDPL HLHQATTCPS QDSNSNSLFG QSSVEVVQRA NNGAVLENRN  780
FLMNFNGLGT AMSPTGTQFL MVKQSIFYYH HMYLQSLYLC D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-99	FAR1 family protein