PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027071488.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 756aa    MW: 85009.3 Da    PI: 6.7353
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027071488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS384.31.4e-1173837541374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++l+++cA+av+++d++ a++lL++++++asp gd +qRla++f+++L+ar+a+++s++ykal  ++ts    ++ l+a++l+   +P+ k+s+
  XP_027071488.1 383 LRTLMIHCAQAVAADDHRSANELLKQIRQHASPFGDGNQRLAHCFAQGLEARIAGTGSQIYKALVNKRTS---AADFLKAFHLYLASCPFRKISN 474
                     57899***********************************************************999998...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++ N++I+ + +++ rvH+iDf+i +G+QWp+++q +a R++gpp++RiTg++ p++g   +e+++etg+rLa++A+ ++vpfe+n+ vak++e+
  XP_027071488.1 475 FASNKTIMIESKNAVRVHVIDFGILYGFQWPTFFQRIAGREGGPPKVRITGIEFPQPGfrPAERIQETGHRLAEYAKMFKVPFEYNA-VAKKWET 568
                     *********************************************************9*****************************.7****** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++le+L++++gE ++Vn++++ ++l+de+v++es r+ vLkl++s++P+++++   +  ++++ F++rf eal ++salfd+le+ +pre  er+
  XP_027071488.1 569 IKLEDLKIEEGEFVVVNCIYRSKNLFDETVAVESSRTIVLKLIRSINPDIFIHGIVNGAYSAPFFVTRFREALFHFSALFDMLETIVPREIPERT 663
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +E+e++gre+ nv+aceg er+er et+++W+ r  +aGF+++pl+ +++k+a   +   + + + ++e+s++l+lgWk+r ++s+S+W+
  XP_027071488.1 664 LIEKEIFGREALNVIACEGWERVERPETYKQWQVRNLRAGFRQIPLDREIMKKAIEKVTSGYHKDFVIDEDSQWLLLGWKGRIIYSLSCWT 754
                     *****************************************************999888888777*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    
MDPSFLGIPA SARGIRLRNQ NLSTFGDLNP NGPTFETLYV DQKRVNHGLT TKNAPLQYNF  60
DGGVEFLPSD PSPSNLTSTS SLGVEDDFSE DLDFSDAVLR YINQMLMEED MEDKAYMLQE  120
SLDLQAKEKS FYEALGKKYP PSPEPHPTFI FQNGASPDEC FSGDQCNLTS TSSNPGSYIA  180
EPSSLNNLAH YDATSLVHCH RAHRAPSSSL SSSMVNSFLD SPSSPPYGSH SVWNFKKGVE  240
EASKFLPDGN KLLNFSINGL FPLELAEEIE EPILQEEGRD DVNFLPTGSR GRKNPHGGDT  300
DLEERSSKLA AVFTESTVRS EEFDIVLLHS MGEGQVALAA YQENLRTAKS KVMLQNGQPK  360
LKGSSGGKGR RKKQNVKKQV IDLRTLMIHC AQAVAADDHR SANELLKQIR QHASPFGDGN  420
QRLAHCFAQG LEARIAGTGS QIYKALVNKR TSAADFLKAF HLYLASCPFR KISNFASNKT  480
IMIESKNAVR VHVIDFGILY GFQWPTFFQR IAGREGGPPK VRITGIEFPQ PGFRPAERIQ  540
ETGHRLAEYA KMFKVPFEYN AVAKKWETIK LEDLKIEEGE FVVVNCIYRS KNLFDETVAV  600
ESSRTIVLKL IRSINPDIFI HGIVNGAYSA PFFVTRFREA LFHFSALFDM LETIVPREIP  660
ERTLIEKEIF GREALNVIAC EGWERVERPE TYKQWQVRNL RAGFRQIPLD REIMKKAIEK  720
VTSGYHKDFV IDEDSQWLLL GWKGRIIYSL SCWTPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein