PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071471.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 390aa MW: 40596.6 Da PI: 9.3931

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071471.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	138.2	2.4e-43	88	163	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +CqvegC+ dls+ak y++rhkvC +hsk+p+v+v+gl+qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+ XP_027071471.1 88 RCQVEGCKLDLSDAKPYYSRHKVCGAHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 163 6*************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence
MELASGSSSS SPSSSDSLNG LKFGKKIYFE AAVAGTADGA GGGQARQGSK PGGGVDSESK 60 ASESGRPPPA PAKKGRSGVA PGGGQPPRCQ VEGCKLDLSD AKPYYSRHKV CGAHSKSPTV 120 IVAGLQQRFC QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPPPGSLLS SRYGSLSSSF 180 FESSSRSGGF LMDFSAYPAL SGRDSWPNGR VSVRATGNQP TGTGKFLQHP WQGNPENPPS 240 ELLLHGSAGR TTYVGPAISS GGCLAGVSDS SRALSLLSTH SWGSGNQSSS LGANGLANVN 300 GTPCGVIQAS GSHGEAIDHF SSPMWGFKGG ENNSGSNEIP PELGLGQLSQ PASSQYSGDL 360 DASSQNGREY LGLEHSRGYN SSIQHMHWSL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence

MELASGSSSS SPSSSDSLNG LKFGKKIYFE AAVAGTADGA GGGQARQGSK PGGGVDSESK  60
ASESGRPPPA PAKKGRSGVA PGGGQPPRCQ VEGCKLDLSD AKPYYSRHKV CGAHSKSPTV  120
IVAGLQQRFC QQCSRFHQLP EFDQGKRSCR RRLAGHNERR RKPPPGSLLS SRYGSLSSSF  180
FESSSRSGGF LMDFSAYPAL SGRDSWPNGR VSVRATGNQP TGTGKFLQHP WQGNPENPPS  240
ELLLHGSAGR TTYVGPAISS GGCLAGVSDS SRALSLLSTH SWGSGNQSSS LGANGLANVN  300
GTPCGVIQAS GSHGEAIDHF SSPMWGFKGG ENNSGSNEIP PELGLGQLSQ PASSQYSGDL  360
DASSQNGREY LGLEHSRGYN SSIQHMHWSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-52	SBP family protein