PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027071350.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 512aa    MW: 57211 Da    PI: 6.8921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027071350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.92e-1071535072374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +lLlecA a+s ++ ++a+++L +l ++a+p+g +  +R++ayf++A+a+r+++s+ ++++ l   ++          ++++f+++ P++kf+h
  XP_027071350.1 153 MTLLLECAVAISVDNIAEAHRMLLELTQMATPYGpSCAERVVAYFAKAMASRVVNSWLGMCSPLINYKS-------IHGSFQVFNNIAPFVKFAH 240
                     679*******************************9999*******************999976644433.......457889************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t Nq Ilea+++ + vHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+g     s e l etg++L++fA++lg++fef++ +a+++ d++
  XP_027071350.1 241 FTSNQSILEAFHRRDGVHIIDLDIMQGLQWPALFHILATRMEGPPHVRMTGMGT----SMELLIETGKQLSNFAKRLGMSFEFHP-IARKFGDVD 330
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     ++++++++gEa+aV++    h+l+d +++  +    +++l+++lsP+v+++veqe+ h ++sFl+rf+ +l+yys+lfdsl a l +++  r+ +
  XP_027071350.1 331 VSMFQIRRGEAVAVHWLQ--HSLYDATGPDWK----TMRLLQQLSPRVITLVEQEIAH-AGSFLDRFVGSLHYYSTLFDSLGAYLQSDDPSRHRI 418
                     *****************9..999999999888....**********************.899********************************* PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ll rei n++a  g +r  +  ++++Wr+ l + GF ++p+s++ ++qa+l+l++++ s+gy++ + +g+l +gWkd +L+svSaW+
  XP_027071350.1 419 EHGLLYREINNILAIGGPARSGED-KFRHWRSELPKNGFMQMPMSTNSMAQAQLILNMFPpSHGYSLVQGDGTLRIGWKDASLYSVSAWT 507
                     *******************77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    
MFKGGFDIVH RGAIEIMQPH EQWDSSYASL GFPGGGSNSI PCTKPIIDNR GINHLERNHR  60
DFPQWVQQVT EQLVENQPET GLSESLQTSE NNIVPALLGE LRPAKSARRN PTESAGQQHQ  120
WFAELGDQIT NFSNDAKGGS TAKGSDDQSL NLMTLLLECA VAISVDNIAE AHRMLLELTQ  180
MATPYGPSCA ERVVAYFAKA MASRVVNSWL GMCSPLINYK SIHGSFQVFN NIAPFVKFAH  240
FTSNQSILEA FHRRDGVHII DLDIMQGLQW PALFHILATR MEGPPHVRMT GMGTSMELLI  300
ETGKQLSNFA KRLGMSFEFH PIARKFGDVD VSMFQIRRGE AVAVHWLQHS LYDATGPDWK  360
TMRLLQQLSP RVITLVEQEI AHAGSFLDRF VGSLHYYSTL FDSLGAYLQS DDPSRHRIEH  420
GLLYREINNI LAIGGPARSG EDKFRHWRSE LPKNGFMQMP MSTNSMAQAQ LILNMFPPSH  480
GYSLVQGDGT LRIGWKDASL YSVSAWTSPA SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-145GRAS family protein