PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071336.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 488aa MW: 53757.9 Da PI: 4.4719

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.4	5e-17	327	375	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ ed++++ ++kdAAk L+v+ ++LKriCR+ I+RWP+Rk +++ XP_027071336.1 327 GITREDIEQNSWRSLKDAAKVLQVSRSTLKRICRKCDIDRWPSRKARKV 375 6999*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MNEKDEDEDE ADYGEDEDED EADYGEDEDE DKVDYGDPMT LLHSLMETLK ECLGSSFMIA 60 SGQELGQKLT VEVIKISSKD EYDSFEICNT TGIESTPRLG EVRGEGMMQL DFSSQQVDAA 120 NGSMNGIHEQ QNGSVGSTPR LAKAQGGEGM MQLDFSSQQV DAANGSMNAI HEQQNGSARS 180 TPRFAKAQGG EGMMQLDFSS QQVDDAANGS INGIHEQQNG SAGSTPRFAK AQGGEGMMHL 240 DFSSQQVDDA ANGSMNAIHE QQNGSAGSTP RFAKAQGGEG MMHLDFSSQQ VDDAANGSMN 300 AIHEQSDSEV TNVKKRKSSR TLKSKLGITR EDIEQNSWRS LKDAAKVLQV SRSTLKRICR 360 KCDIDRWPSR KARKVNQASA EQRVVQPSTE NTAEQHRPDT TRLGDDSSIW VKAEYQGDTM 420 KFRLPLSAHK FNLEEKVAQR LNLPIGSFKI QYQDEENEWI WIACDEDLST CTSTLSSLGR 480 TTIRMLVR

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MNEKDEDEDE ADYGEDEDED EADYGEDEDE DKVDYGDPMT LLHSLMETLK ECLGSSFMIA  60
SGQELGQKLT VEVIKISSKD EYDSFEICNT TGIESTPRLG EVRGEGMMQL DFSSQQVDAA  120
NGSMNGIHEQ QNGSVGSTPR LAKAQGGEGM MQLDFSSQQV DAANGSMNAI HEQQNGSARS  180
TPRFAKAQGG EGMMQLDFSS QQVDDAANGS INGIHEQQNG SAGSTPRFAK AQGGEGMMHL  240
DFSSQQVDDA ANGSMNAIHE QQNGSAGSTP RFAKAQGGEG MMHLDFSSQQ VDDAANGSMN  300
AIHEQSDSEV TNVKKRKSSR TLKSKLGITR EDIEQNSWRS LKDAAKVLQV SRSTLKRICR  360
KCDIDRWPSR KARKVNQASA EQRVVQPSTE NTAEQHRPDT TRLGDDSSIW VKAEYQGDTM  420
KFRLPLSAHK FNLEEKVAQR LNLPIGSFKI QYQDEENEWI WIACDEDLST CTSTLSSLGR  480
TTIRMLVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	8e-12	Nin-like family protein