PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071335.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 755aa MW: 84671.5 Da PI: 5.4303

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071335.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	58.8	1.1e-18	589	637	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+le+l+++ +++dAAk++gv+ ++LKriCR+y I+RWP Rk +++ XP_027071335.1 589 GITLEVLEQNSTRKLEDAAKNIGVSRSTLKRICREYSIRRWPPRKARKV 637 69*******************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence
MAIMEAQTSP SPPFSTEGLA PCQLSYSHSF NNFYHWWVFW STCGDDEGCC GKPHHLSATA 60 DGAVIKDKII RLLELLYDAL PPDCLVQFWG LVTTGDKTYL TTCDQPFALH YYVSHFNDQD 120 VEKLCEYRKH CLGYLIPVDD DHEIGPPGRV FRSGLPEYAW DVSHYTSREY PQRDYAVGRV 180 DQYWALPIYH HPSRHLPIGV LEIVSPYEFS GLPQYQVLEN LQEVNLTTTC IRLAEASSCQ 240 PGEITTIDEA LRKVRKICGL GCGDTEIWTT SGEILSSRHG LDFIRKGQGV VGRAFSSKSA 300 CFCRDIRELS ITEYPLVVNA RSCECSACFA VCLQSSCSNN CIYVLEFFLP MCEEDPRTLL 360 NSIMEKLKNH LRSSFKIASE QELGQKLTIE VIKVSPEDKF DSFEFCSTTG IESTPRLREV 420 QGVEGMMQLD FSSKQVDAAN GSMNGIQEQQ NGSVGSTPRL AKAQGGEGMM QVDAANASIN 480 GVHAQQSGIV GSPPRPEHEQ GFVNISYQEL NLAGFYVAQN SMNGIYEQQN GVVRSSTGQG 540 LMQNMVSIAH DEPIVEDPQR DGASIEQRDS EVTNLKMQEP SCTLKSELGI TLEVLEQNST 600 RKLEDAAKNI GVSRSTLKRI CREYSIRRWP PRKARKVNQA FAVQKIVQPS TEDTREHHRS 660 DATRLEDDNG MWVKAEYQGC MIKFRLPFSA HKIHLEEKVA QRLNLAVGSF KIEYQDEDND 720 RIRITCDEDL STSISTLSSL GRTTIKMYVI STSLH

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence

MAIMEAQTSP SPPFSTEGLA PCQLSYSHSF NNFYHWWVFW STCGDDEGCC GKPHHLSATA  60
DGAVIKDKII RLLELLYDAL PPDCLVQFWG LVTTGDKTYL TTCDQPFALH YYVSHFNDQD  120
VEKLCEYRKH CLGYLIPVDD DHEIGPPGRV FRSGLPEYAW DVSHYTSREY PQRDYAVGRV  180
DQYWALPIYH HPSRHLPIGV LEIVSPYEFS GLPQYQVLEN LQEVNLTTTC IRLAEASSCQ  240
PGEITTIDEA LRKVRKICGL GCGDTEIWTT SGEILSSRHG LDFIRKGQGV VGRAFSSKSA  300
CFCRDIRELS ITEYPLVVNA RSCECSACFA VCLQSSCSNN CIYVLEFFLP MCEEDPRTLL  360
NSIMEKLKNH LRSSFKIASE QELGQKLTIE VIKVSPEDKF DSFEFCSTTG IESTPRLREV  420
QGVEGMMQLD FSSKQVDAAN GSMNGIQEQQ NGSVGSTPRL AKAQGGEGMM QVDAANASIN  480
GVHAQQSGIV GSPPRPEHEQ GFVNISYQEL NLAGFYVAQN SMNGIYEQQN GVVRSSTGQG  540
LMQNMVSIAH DEPIVEDPQR DGASIEQRDS EVTNLKMQEP SCTLKSELGI TLEVLEQNST  600
RKLEDAAKNI GVSRSTLKRI CREYSIRRWP PRKARKVNQA FAVQKIVQPS TEDTREHHRS  660
DATRLEDDNG MWVKAEYQGC MIKFRLPFSA HKIHLEEKVA QRLNLAVGSF KIEYQDEDND  720
RIRITCDEDL STSISTLSSL GRTTIKMYVI STSLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	2e-39	Nin-like family protein