PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071300.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 515aa MW: 56503.1 Da PI: 7.1268

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071300.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.4	3e-09	313	358	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ +++P + K +Ka++L + +eY+ksLq XP_027071300.1 313 VHNLSERRRRDRINEKMRA-XQVIPRC-----NKSDKASMLDEXIEYLKSLQ 358 6*************987.7899998.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MNHCVPDFEM DDDYGIPTSS SINASTTARP KKPAIGEEEI MELLWQNGQV VFQSQNQRSF 60 KKSPNRGGEP DQLHQSGASR EIPSILENTT YAAPPPQQLF MQEDEMASWL HYPLDDSSFD 120 RDLYSDLLYP PPPSASTTTT MTPTPSVPPK NSAQLSGDPP AASRYSSSTR TSSFERHLPN 180 RGSCWWTPMR RKQRCRNRGF PEGDVRCGAV SSTAAAATSA AARDLATTAC ELTVTSSPGP 240 PGXSVSATAE PHHRPPTSII NRARPCGGPE ASLHLTTIDL SLQKTQDIEF ESADAKRQAR 300 GSTSTKRSRA AEVHNLSERR RRDRINEKMR AXQVIPRCNK SDKASMLDEX IEYLKSLQLQ 360 VQLLSMDVHA PDDVSSVQQY MPAMMGMGMG MGMGMDXGMN RPVTISIFYT GSGMPSPAVA 420 ANMGPRFPMP AFHMQPVPXP DSSRIQASNQ LDPMLNSLVT PNPNQPRVPN FADPYQQFIG 480 LHQAQIPLPQ NQVVVQPSKP NSSREVGNLD NHQSG

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MNHCVPDFEM DDDYGIPTSS SINASTTARP KKPAIGEEEI MELLWQNGQV VFQSQNQRSF  60
KKSPNRGGEP DQLHQSGASR EIPSILENTT YAAPPPQQLF MQEDEMASWL HYPLDDSSFD  120
RDLYSDLLYP PPPSASTTTT MTPTPSVPPK NSAQLSGDPP AASRYSSSTR TSSFERHLPN  180
RGSCWWTPMR RKQRCRNRGF PEGDVRCGAV SSTAAAATSA AARDLATTAC ELTVTSSPGP  240
PGXSVSATAE PHHRPPTSII NRARPCGGPE ASLHLTTIDL SLQKTQDIEF ESADAKRQAR  300
GSTSTKRSRA AEVHNLSERR RRDRINEKMR AXQVIPRCNK SDKASMLDEX IEYLKSLQLQ  360
VQLLSMDVHA PDDVSSVQQY MPAMMGMGMG MGMGMDXGMN RPVTISIFYT GSGMPSPAVA  420
ANMGPRFPMP AFHMQPVPXP DSSRIQASNQ LDPMLNSLVT PNPNQPRVPN FADPYQQFIG  480
LHQAQIPLPQ NQVVVQPSKP NSSREVGNLD NHQSG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	323	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	6e-32	bHLH family protein