PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071220.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 875aa MW: 101619 Da PI: 8.6841

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071220.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.1	1.7e-24	63	148	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y++YA++ Fsvr+++ +ks+ +++i+ ++fvCskeg+r+++++k + +r +tr gCka + v+++++gkw +++l+leHnH la XP_027071220.1 63 CYSNYAHNKRFSVRRNRITKSRSDKSIIGQEFVCSKEGFRSKKDSK---ADMPRDKTRQGCKALVYVSQKEEGKWIIARLVLEHNHVLA 148 7**************************************99877...999********************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 875 aa Download sequence
MGTECRMERE LCIECPMEQD QFDHDAAHGS MPEDSTSEQI EPRKEVNLYV GMEFESLDDA 60 FKCYSNYAHN KRFSVRRNRI TKSRSDKSII GQEFVCSKEG FRSKKDSKAD MPRDKTRQGC 120 KALVYVSQKE EGKWIIARLV LEHNHVLASP YSKKFLRSKR KKSVAQKNLI DMLDQSGVRP 180 SKIVSVLATQ VGGIGNLNVT DHDVCNYLST KRHKELEKGD AQLMLQYFQK RQSENPGFFY 240 AIQVDIEGRL ANCFWADAKS RSLYKHFGDV VTFDPTYLTN KYKMPFVPLT GVNHHYQSIL 300 FGGALLWDET EESFVWLLQT WLEAMLGCPP KTVITDQDTA ITNAVARVLP HSTHHFCMWH 360 IEKKFPETLS HIYHQNIDFK YHFSKCIHDT ITPEEFEMAW TELIEKYKLQ NNTWIQKVYS 420 IRERWVPAFV RASFCAGMST TQRSESMNKF FKDYLNSSTA MSKFVTQYDR AIEARYDKEK 480 EKNFKTKNTK PILKTLYPME VEAAKVYTRK IFRMFQDELL ESQKYVSEKI TMKDGVYKYR 540 VHECQKEFPS YIVILNIVEQ KVECSCHKFE FVGILCKHAL MVFIKKQIHS LPMHYLLDRW 600 TMSAICGRDE GDFSEKLHQA EPLRNSSMWF NDIMVRSLGI SEKASRSAKH HRVALQGLQA 660 LSDKLDDLPY ENEQDSSLSI SQVDSHSEIH DLTQGQTSQK SITLFNPVTV ASKGRPRTLR 720 MKGGLEKSRK INKCSCCKEK GHNRSYNRLP IFINEVTQYD KPSVCSSLVE LSVDQIAVDL 780 LILQRVIQVE TILFSALVVH FSAVVYLNYS PISWFIISPP VEVRIRLLGF WKFCLGIFQE 840 DHGLMPNLEM IARIWYMGKK FICGLFPFWN STSRN

Sequence ? help Back to Top

Protein Sequence Length: 875 aa Download sequence

MGTECRMERE LCIECPMEQD QFDHDAAHGS MPEDSTSEQI EPRKEVNLYV GMEFESLDDA  60
FKCYSNYAHN KRFSVRRNRI TKSRSDKSII GQEFVCSKEG FRSKKDSKAD MPRDKTRQGC  120
KALVYVSQKE EGKWIIARLV LEHNHVLASP YSKKFLRSKR KKSVAQKNLI DMLDQSGVRP  180
SKIVSVLATQ VGGIGNLNVT DHDVCNYLST KRHKELEKGD AQLMLQYFQK RQSENPGFFY  240
AIQVDIEGRL ANCFWADAKS RSLYKHFGDV VTFDPTYLTN KYKMPFVPLT GVNHHYQSIL  300
FGGALLWDET EESFVWLLQT WLEAMLGCPP KTVITDQDTA ITNAVARVLP HSTHHFCMWH  360
IEKKFPETLS HIYHQNIDFK YHFSKCIHDT ITPEEFEMAW TELIEKYKLQ NNTWIQKVYS  420
IRERWVPAFV RASFCAGMST TQRSESMNKF FKDYLNSSTA MSKFVTQYDR AIEARYDKEK  480
EKNFKTKNTK PILKTLYPME VEAAKVYTRK IFRMFQDELL ESQKYVSEKI TMKDGVYKYR  540
VHECQKEFPS YIVILNIVEQ KVECSCHKFE FVGILCKHAL MVFIKKQIHS LPMHYLLDRW  600
TMSAICGRDE GDFSEKLHQA EPLRNSSMWF NDIMVRSLGI SEKASRSAKH HRVALQGLQA  660
LSDKLDDLPY ENEQDSSLSI SQVDSHSEIH DLTQGQTSQK SITLFNPVTV ASKGRPRTLR  720
MKGGLEKSRK INKCSCCKEK GHNRSYNRLP IFINEVTQYD KPSVCSSLVE LSVDQIAVDL  780
LILQRVIQVE TILFSALVVH FSAVVYLNYS PISWFIISPP VEVRIRLLGF WKFCLGIFQE  840
DHGLMPNLEM IARIWYMGKK FICGLFPFWN STSRN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-154	FAR1 family protein