PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027071125.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 797aa MW: 92125 Da PI: 7.4036

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027071125.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.6	5.6e-25	70	158	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YAk GF +r sk +k k+n+ + +r f+Cs+egk+ ++k++ + +r+etr++C a++k++ ++ +k++v +++ eHnHel+ XP_027071125.1 70 NFYQKYAKASGFGTRLSKGHKDKNNDLMLDRVFCCSREGKKPKDKRN-MIVKCPRPETRCDCSARMKISCRQGEKYRVVQFVAEHNHELS 158 6****************************************9999.99999*********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 797 aa Download sequence
MENDLPIHEV QSCRKLDFED VDLQEINDNA LPLCITDGNR RNQIFLPLAI PDDLVPKLDM 60 EFDTEVAAKN FYQKYAKASG FGTRLSKGHK DKNNDLMLDR VFCCSREGKK PKDKRNMIVK 120 CPRPETRCDC SARMKISCRQ GEKYRVVQFV AEHNHELSTP SKTHLFRSHR HLTMAHEAEI 180 YMARSCGITP KQSIELMSKQ VGGRENLGFI RDDLKNYLRS KRSIPMMQGD TGGVLEYLQG 240 MQLEDPNFFY AIQVDEDDLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGRPIALFV 300 GVNHHKQTTV FGAALLYDET ILTFEWLFDT FAKAMMGKIP RTILTDQDGR MATALASQWP 360 TTYHRLCIWH IYQNAATHLA DVFKDFQNFS TDFSHCIYDY ENEDDFFEGW SEMLKTYGLE 420 DNKWLKKMFD IKEKWALVYG RETFCADMTT TQRSESMNSV IKKYVSYKHG LLEFFEHFQR 480 LLDDRRYNES VADFKGNQST PAMTFPCRIL QHAASVYTHE VYEKFKEELC KGIDCKWEVD 540 GDLGNQMSYR VTPHGKTSHH LVTYDSSTNS ICCSCKKFEF AGFLCSHALK ILMTLNIVTI 600 PDAYILKRWT KAAKTGNVHV SSESSPEMEL KAKLSFRYKE LSYLYMQLMT KASECDEAYQ 660 IAKDGFWKMS EQMDACCQGK KKMKEVRIEE HCSVYQDVDT NPSEIAYNKI KGIKVKEKVT 720 YKSSKRPRSA LEMATKKRKY KVKEKFSSKR LQELGNNVVN SSMDSATIQG FAPELPPQQG 780 QELGNNDDSD QQVAKDE

Sequence ? help Back to Top

Protein Sequence Length: 797 aa Download sequence

MENDLPIHEV QSCRKLDFED VDLQEINDNA LPLCITDGNR RNQIFLPLAI PDDLVPKLDM  60
EFDTEVAAKN FYQKYAKASG FGTRLSKGHK DKNNDLMLDR VFCCSREGKK PKDKRNMIVK  120
CPRPETRCDC SARMKISCRQ GEKYRVVQFV AEHNHELSTP SKTHLFRSHR HLTMAHEAEI  180
YMARSCGITP KQSIELMSKQ VGGRENLGFI RDDLKNYLRS KRSIPMMQGD TGGVLEYLQG  240
MQLEDPNFFY AIQVDEDDLI TNIFWADAKM RTDFAHFGDV VCFDTTYRKH KDGRPIALFV  300
GVNHHKQTTV FGAALLYDET ILTFEWLFDT FAKAMMGKIP RTILTDQDGR MATALASQWP  360
TTYHRLCIWH IYQNAATHLA DVFKDFQNFS TDFSHCIYDY ENEDDFFEGW SEMLKTYGLE  420
DNKWLKKMFD IKEKWALVYG RETFCADMTT TQRSESMNSV IKKYVSYKHG LLEFFEHFQR  480
LLDDRRYNES VADFKGNQST PAMTFPCRIL QHAASVYTHE VYEKFKEELC KGIDCKWEVD  540
GDLGNQMSYR VTPHGKTSHH LVTYDSSTNS ICCSCKKFEF AGFLCSHALK ILMTLNIVTI  600
PDAYILKRWT KAAKTGNVHV SSESSPEMEL KAKLSFRYKE LSYLYMQLMT KASECDEAYQ  660
IAKDGFWKMS EQMDACCQGK KKMKEVRIEE HCSVYQDVDT NPSEIAYNKI KGIKVKEKVT  720
YKSSKRPRSA LEMATKKRKY KVKEKFSSKR LQELGNNVVN SSMDSATIQG FAPELPPQQG  780
QELGNNDDSD QQVAKDE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	1e-136	FAR1 family protein