PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070552.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 357aa    MW: 39423.1 Da    PI: 5.6124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070552.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.55.6e-09200247455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a++L + +++++ Lq
  XP_027070552.1 200 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQCLQ 247
                     8*************************9....899999***********9998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    
MDSMEAIQAR SATCEVIGGE FSHQVGEEIH RLMSVQPDSG SSFTALLELP ANQAVELLVH  60
SPEAAIAESP SVTRPLEQFS QCPPPPPAST LIFPSDTALV DRAAKFSTLV NSDDNSRAKL  120
ESVKQEPADS DSNPTSNSSP AVSHPAVEQN PNSAKRKERE KKGKESNKKG KKAANETSED  180
GREKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS GTAMVLDEII  240
NHVQCLQRQV EFLSMRLATV NPRVDFNLDT LLAAESGSPI ETNFQGMVMP SMWPEEQVHG  300
NRQQYQQLWH LDGLHQPIWG REEDNSNFIT PENSLLSYDS SANSASLHSN QLKMELL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.26e-91bHLH family protein