PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027070547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 467aa MW: 52303.2 Da PI: 4.6952 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 132.6 | 4.3e-41 | 85 | 466 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL++ Aea++ g+ ela+ + +r+se +sp gd+++Rl y+ AL ++ +++s ++ +a+k+f++++P kf+h++ XP_027070547.1 85 HLLMAYAEAMEMGQEELAEVIAKRISEKVSPVGDTVERLLYYMFHALDKQSDY----------LKQES---AKNFYQAFKAFYQIFPNGKFAHFA 166 89*********************************************998665..........33333...67899999**************** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185 aN aIle++ + +++ i Dfdi++G+QW++L++a+ +R+ s++ ++++ + + e +++L+++A++ g+++ + + + XP_027070547.1 167 ANLAILESLPDDaDTIRIFDFDIGEGIQWASLIEAIGhqCREVTLTSVKFAEGEDAAMDanplTMWRFEDAKKQLSDYARSYGLKLMVDEV---E 258 *********8877***********************94455566666666655555544888889999********************998...3 PP GRAS 186 ledl..eleeLrvkp......gEalaVnlvlqlhrlldesvsles.....erdevLklvks......lsPkvvvvveqe..adh.nsesFlerfl 258 l+dl el++++ ++ + l+ n+++ l ++ + + + + +++L+lv + v+++ + + + n++++ + XP_027070547.1 259 LADLvgELKNISNRKqgssgrRQFLVFNCMVGLPHMGRVRSRRDVfeflqASQSFLQLVHAsaacgnYKGGVITFGDGDawEKVrNTSTYGSFLD 353 33332345555544455555699************995444433344454788999999752222225778******994323359999999999 PP GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351 + +y al++s++ ++p+ e+r+ +E+ +++++++++ +e+ e r+r + +G++ ++ls + ++ak ++r+ + g r+ XP_027070547.1 354 GNMAHYQALLESIKLNFPSYLgEARTAMENLFVAPSVSSLAWAEKWEERKRYGQ------LELGFGLEGLKLSRESLMEAKEVVREGEsLYGVRM 442 9*****************998899*********************995555553......3356999********************98888998 PP GRAS 352 e.eesgslvlgWkdrpLvsvSaWr 374 + e+++++v+ W++ p+v vS+Wr XP_027070547.1 443 QgESHNEMVMDWRGTPMVRVSCWR 466 8899*******************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 467 aa Download sequence |
MDITTEDVLV FFEDPISIDG QITDVSMSPE ESKGGNCIHS CHQISMPSSS MRSSHAASLD 60 VTSMPSSLVL PAEGVELDNE LAAFHLLMAY AEAMEMGQEE LAEVIAKRIS EKVSPVGDTV 120 ERLLYYMFHA LDKQSDYLKQ ESAKNFYQAF KAFYQIFPNG KFAHFAANLA ILESLPDDAD 180 TIRIFDFDIG EGIQWASLIE AIGHQCREVT LTSVKFAEGE DAAMDANPLT MWRFEDAKKQ 240 LSDYARSYGL KLMVDEVELA DLVGELKNIS NRKQGSSGRR QFLVFNCMVG LPHMGRVRSR 300 RDVFEFLQAS QSFLQLVHAS AACGNYKGGV ITFGDGDAWE KVRNTSTYGS FLDGNMAHYQ 360 ALLESIKLNF PSYLGEARTA MENLFVAPSV SSLAWAEKWE ERKRYGQLEL GFGLEGLKLS 420 RESLMEAKEV VREGESLYGV RMQGESHNEM VMDWRGTPMV RVSCWRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41920.1 | 7e-14 | GRAS family protein |