PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070547.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 467aa    MW: 52303.2 Da    PI: 4.6952
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070547.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS132.64.3e-41854663374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++ Aea++ g+ ela+ + +r+se +sp gd+++Rl  y+  AL ++              +++s    ++  +a+k+f++++P  kf+h++
  XP_027070547.1  85 HLLMAYAEAMEMGQEELAEVIAKRISEKVSPVGDTVERLLYYMFHALDKQSDY----------LKQES---AKNFYQAFKAFYQIFPNGKFAHFA 166
                     89*********************************************998665..........33333...67899999**************** PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvakr 185
                     aN aIle++  + +++ i Dfdi++G+QW++L++a+   +R+    s++    ++++ +       + e  +++L+++A++ g+++  + +   +
  XP_027070547.1 167 ANLAILESLPDDaDTIRIFDFDIGEGIQWASLIEAIGhqCREVTLTSVKFAEGEDAAMDanplTMWRFEDAKKQLSDYARSYGLKLMVDEV---E 258
                     *********8877***********************94455566666666655555544888889999********************998...3 PP

            GRAS 186 ledl..eleeLrvkp......gEalaVnlvlqlhrlldesvsles.....erdevLklvks......lsPkvvvvveqe..adh.nsesFlerfl 258
                     l+dl  el++++ ++      +  l+ n+++ l ++ + +   +      + +++L+lv         +  v+++ + +   +  n++++   + 
  XP_027070547.1 259 LADLvgELKNISNRKqgssgrRQFLVFNCMVGLPHMGRVRSRRDVfeflqASQSFLQLVHAsaacgnYKGGVITFGDGDawEKVrNTSTYGSFLD 353
                     33332345555544455555699************995444433344454788999999752222225778******994323359999999999 PP

            GRAS 259 ealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrv 351
                       + +y al++s++ ++p+   e+r+ +E+ +++++++++  +e+ e r+r  +          +G++ ++ls +  ++ak ++r+ +   g r+
  XP_027070547.1 354 GNMAHYQALLESIKLNFPSYLgEARTAMENLFVAPSVSSLAWAEKWEERKRYGQ------LELGFGLEGLKLSRESLMEAKEVVREGEsLYGVRM 442
                     9*****************998899*********************995555553......3356999********************98888998 PP

            GRAS 352 e.eesgslvlgWkdrpLvsvSaWr 374
                     + e+++++v+ W++ p+v vS+Wr
  XP_027070547.1 443 QgESHNEMVMDWRGTPMVRVSCWR 466
                     8899*******************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    
MDITTEDVLV FFEDPISIDG QITDVSMSPE ESKGGNCIHS CHQISMPSSS MRSSHAASLD  60
VTSMPSSLVL PAEGVELDNE LAAFHLLMAY AEAMEMGQEE LAEVIAKRIS EKVSPVGDTV  120
ERLLYYMFHA LDKQSDYLKQ ESAKNFYQAF KAFYQIFPNG KFAHFAANLA ILESLPDDAD  180
TIRIFDFDIG EGIQWASLIE AIGHQCREVT LTSVKFAEGE DAAMDANPLT MWRFEDAKKQ  240
LSDYARSYGL KLMVDEVELA DLVGELKNIS NRKQGSSGRR QFLVFNCMVG LPHMGRVRSR  300
RDVFEFLQAS QSFLQLVHAS AACGNYKGGV ITFGDGDAWE KVRNTSTYGS FLDGNMAHYQ  360
ALLESIKLNF PSYLGEARTA MENLFVAPSV SSLAWAEKWE ERKRYGQLEL GFGLEGLKLS  420
RESLMEAKEV VREGESLYGV RMQGESHNEM VMDWRGTPMV RVSCWRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.17e-14GRAS family protein