PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027070510.1

Organism

Coffea arabica

Taxonomic ID

13443

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 547aa MW: 61353.5 Da PI: 8.2104

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027070510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.1	3.2e-13	361	405	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + ErrRR+++N++f+ Lr+llP+ +K +Ka++L+ + eY++sL XP_027070510.1 361 HMISERRRREKLNESFQALRSLLPPG-----TKKDKASVLTSTREYLSSL 405 7889******************97.....8**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MDSVFSLGEG DRAIFLQHLV QSFGCTYICL WSYDPQPSIC LRYRDGYYHE RSNNQQPSTS 60 SGSLAHRRFI EYGQSIIIVD SSHIPGLAFL NNRPYMELQL ADLRRMASTE TQRLFYEEAG 120 IKTAIFMGCN AGEIELGFSD GSQVNMELEM RNLFPVDFSR PLLDPTTTRD QLPQQLSTTD 180 QNRPASSSSS LRSLSYDSPE YSPLLFDMPA TSYLVPEPQR EAMIQQALGS AHRPVFSPTA 240 ASPHQQAIRA LNQIRNIQLP TIESEDAAMT EAMIAVISSS ASPSSSVQQP QQNFPPNYRV 300 NGSHASAFRR YRPSLAPRLP TSSRIQGENV VKRSITFLRT LNSMRSQVQM LAGRTSSTLH 360 HMISERRRRE KLNESFQALR SLLPPGTKKD KASVLTSTRE YLSSLKDQVA ELSKRNHVLE 420 AQLLPKCLQL LRKQVARVSS VERVEVQIRD VGASTSASSS SSSSSRIVDL QVILRAEVSM 480 VDLVVRLLEF LKIDQNVSLM SVEANTRMAE PTSVSNVVLM RLRIEEGEWD ESAFQEAIRR 540 VLNDLAQ

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MDSVFSLGEG DRAIFLQHLV QSFGCTYICL WSYDPQPSIC LRYRDGYYHE RSNNQQPSTS  60
SGSLAHRRFI EYGQSIIIVD SSHIPGLAFL NNRPYMELQL ADLRRMASTE TQRLFYEEAG  120
IKTAIFMGCN AGEIELGFSD GSQVNMELEM RNLFPVDFSR PLLDPTTTRD QLPQQLSTTD  180
QNRPASSSSS LRSLSYDSPE YSPLLFDMPA TSYLVPEPQR EAMIQQALGS AHRPVFSPTA  240
ASPHQQAIRA LNQIRNIQLP TIESEDAAMT EAMIAVISSS ASPSSSVQQP QQNFPPNYRV  300
NGSHASAFRR YRPSLAPRLP TSSRIQGENV VKRSITFLRT LNSMRSQVQM LAGRTSSTLH  360
HMISERRRRE KLNESFQALR SLLPPGTKKD KASVLTSTRE YLSSLKDQVA ELSKRNHVLE  420
AQLLPKCLQL LRKQVARVSS VERVEVQIRD VGASTSASSS SSSSSRIVDL QVILRAEVSM  480
VDLVVRLLEF LKIDQNVSLM SVEANTRMAE PTSVSNVVLM RLRIEEGEWD ESAFQEAIRR  540
VLNDLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	365	370	ERRRRE
2	366	371	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-62	bHLH family protein