PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070508.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 370aa    MW: 41722.9 Da    PI: 6.5966
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070508.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.7e-07110134126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     ykt+ C  f+  G Ck G++C++aHg
  XP_027070508.1 110 YKTRMCAKFSF-GSCKNGEKCTYAHG 134
                     9*********9.*************8 PP

2zf-CCCH26.51.1e-08168191225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k++lC+ f+ + +C+yG++C+F H
  XP_027070508.1 168 KMKLCKKFYNGEECPYGEKCNFLH 191
                     789*******66************ PP

3zf-CCCH437.2e-14258284127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ +  tG C++G+rC+FaHg+
  XP_027070508.1 258 WKTKLCSKWEITGRCPFGERCHFAHGQ 284
                     8************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MSFPNPPPPV PPLPPPQPPL PAYTQVPFSD GDVGGFWPGL PLEYPGFPAG FPVNHEDLDL  60
YERFEHAPPP KRPRNSDYNN AVSEPFSTLI NPRMNPSNPL GSKGTSHIFY KTRMCAKFSF  120
GSCKNGEKCT YAHGIEDMRE PPPNWQEFLA EKDGAARTWT DDQRLIHKMK LCKKFYNGEE  180
CPYGEKCNFL HERRIPSFSS LDERPRSKTD LPMQRESSVI SIGTRGSSIG NPSDYDQPEV  240
SRPVDPNMDA LRPKTSSWKT KLCSKWEITG RCPFGERCHF AHGQSELNVS TAQVDVEVTV  300
NSSPFQTKPV SIPVFDSSAA NLEVGAPVPE VMQDKNFSWW RPKKKMNKIY ADWLDDQTPP  360
HGSPNEVEDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-68C3H family protein