PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027070508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | C3H | ||||||||
Protein Properties | Length: 370aa MW: 41722.9 Da PI: 6.5966 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.7e-07 | 110 | 134 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f+ G Ck G++C++aHg XP_027070508.1 110 YKTRMCAKFSF-GSCKNGEKCTYAHG 134 9*********9.*************8 PP | |||||||
2 | zf-CCCH | 26.5 | 1.1e-08 | 168 | 191 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ f+ + +C+yG++C+F H XP_027070508.1 168 KMKLCKKFYNGEECPYGEKCNFLH 191 789*******66************ PP | |||||||
3 | zf-CCCH | 43 | 7.2e-14 | 258 | 284 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC+ + tG C++G+rC+FaHg+ XP_027070508.1 258 WKTKLCSKWEITGRCPFGERCHFAHGQ 284 8************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence |
MSFPNPPPPV PPLPPPQPPL PAYTQVPFSD GDVGGFWPGL PLEYPGFPAG FPVNHEDLDL 60 YERFEHAPPP KRPRNSDYNN AVSEPFSTLI NPRMNPSNPL GSKGTSHIFY KTRMCAKFSF 120 GSCKNGEKCT YAHGIEDMRE PPPNWQEFLA EKDGAARTWT DDQRLIHKMK LCKKFYNGEE 180 CPYGEKCNFL HERRIPSFSS LDERPRSKTD LPMQRESSVI SIGTRGSSIG NPSDYDQPEV 240 SRPVDPNMDA LRPKTSSWKT KLCSKWEITG RCPFGERCHF AHGQSELNVS TAQVDVEVTV 300 NSSPFQTKPV SIPVFDSSAA NLEVGAPVPE VMQDKNFSWW RPKKKMNKIY ADWLDDQTPP 360 HGSPNEVEDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 2e-68 | C3H family protein |