PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027070471.1
Organism
Coffea arabica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 587aa    MW: 66210.7 Da    PI: 7.0369
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027070471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.4e-30132217187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  XP_027070471.1 132 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 217
                     8*************************************999*****************************98..55667*******85 PP
2trihelix57.24.5e-18433505277
        trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                     W + e+ +Li++r++me r+++ g+ ++ lWee+++km+  g+ r+p +Ck+kw++++ +  k+ + +k+     s+
  XP_027070471.1 433 WAECEITKLIQLRTNMEPRFQQiGCPEEILWEEIAAKMACVGYDRTPLMCKDKWDSVSSYLMKCSKKRKES----SR 505
                     *********************879****************************************9998873....44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    
MEEHQYGMAD LRQYMNGSRP LFAPIPPPPP DLLSGHRTLT VVPTQQHYHE MVMGRGVGHH  60
HHHHHHHQDM VPSAGCGGAL QHPEFRSDSS TSTTTPSIRC GLSTGAAIGF GSGGLEMEAG  120
CGLGGGDGGT GRWPRQETLT LLEIRSRLDP KFKEANQKGP LWDEVSRIMS EEHGYQRSGK  180
KCREKFENLY KYYKKTKEGK AGRQDGKHYR FFRQLEALYG DTSNAASVSE NHLLGNSVRY  240
NAAANNTTSV SNQEASFQAQ KLSDSLSLSN SSDFDTTSSE DSDLQATVDN DSNEKRKKRS  300
KGKRSWKAKI KDFIDSQMTK LMKKQEAWLE NMMKTIEQKE QERMLREEDW RKQEAARVER  360
EHRFWANERT WIESRDAAMM EALQKLTGKE LVKASTTPDD QELMAAHGLQ SMNKHHNDNG  420
SETIPSFLKG DSWAECEITK LIQLRTNMEP RFQQIGCPEE ILWEEIAAKM ACVGYDRTPL  480
MCKDKWDSVS SYLMKCSKKR KESSRFCCYL NNDSITGQGG NYSCDTNDDQ GGPDQTVRHA  540
PQNDQGASPP NGDTGHGMHD GCYRYLMGDA ENLWENYGAK FSKGVNQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298304KRSKGKR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-58Trihelix family protein