PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027070307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | NF-YA | ||||||||
Protein Properties | Length: 184aa MW: 20875.9 Da PI: 10.8498 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 30.7 | 1e-09 | 23 | 41 | 1 | 19 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRq 19 d p+YVNaKQy++Il+RRq XP_027070307.1 23 DGPIYVNAKQYHGILRRRQ 41 57****************8 PP | |||||||
2 | CBFB_NFYA | 41 | 6.1e-13 | 40 | 63 | 35 | 58 |
CBFB_NFYA 35 rkpylheSRhkhAlrRpRgsgGrF 58 r+pylheSRh+hA++R RgsgGrF XP_027070307.1 40 RQPYLHESRHQHAMNRVRGSGGRF 63 99*********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence |
MIQPQMMGIA PARVPLPPDL AQDGPIYVNA KQYHGILRRR QPYLHESRHQ HAMNRVRGSG 60 GRFLSTKKQQ QQSESTLSTG SFSASIHSCQ ETDALEMEAE RSNDSRHYAS TSTSSSAMDT 120 LLMISFSSSM PTATSAFLVK SLVRCRREAS CRMELRSMFR LPGEKRSKKH RTWQFILGFV 180 TFKF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 160 | 168 | RLPGEKRSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-21 | NF-YA family protein |